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18 protocols using anti ngf

1

Culturing and Characterizing Human Pancreatic Cell Lines

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Human PC cell lines (AsPC-1, BxPC-3, CFPAC-1, Panc-1, and SW1990) and rat Schwann cells
(RSC96) were purchased from the Chinese Academy of Sciences Cell Bank of Type Culture
Collection (CBTCCCAS). All cell lines were cultured in the proper medium (HyClone, Logan,
UT, USA) supplemented with 10% fetal bovine serum (FBS), 100 μg/mL ampicillin, and 100
μg/mL streptomycin under a humidified atmosphere at 37°C with 5% CO2.
Recombinant human HGF (rhHGF) was purchased from ProSpec (ProSpec-Tany TechnoGene,
Rehovot, Israel). Antibodies were purchased from the following sources: anti-c-Met,
anti-p-c-met, and anti-β-actin (Cell Signaling Technology, Danvers, MA, USA); anti-MMP-9
(Bioworld, Minneapolis, MN, USA); and anti-NGF, (Abcam, Cambridge, MA, USA).
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2

Culturing Human Pancreatic Cancer Cells

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The human PC cell lines (BxPC3 and Panc-1) were obtained from the Chinese Academy of Sciences Cell Bank of Type Culture Collection, and they were cultured in the corresponding medium (Invitrogen) which contains 10% fetal bovine serum (FBS), 100 μg/ml penicillin-streptomycin. The cells were incubated at 37°C in a humidified atmosphere containing 5% CO2. Antibodies were purchased from the following sources: recombinant mature human Nodal (rhNodal) (R&D Systems) and its inhibitor SB431542 (Sigma-Aldrich); anti-MMP-9 (Bioworld); and anti-NGF, anti-BDNF, and anti-GDNF (Abcam).
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3

Detailed Immunostaining Protocol for Tissue Analysis

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Immunostaining was performed as described previously (Liu et al., 2019b (link)). After antigen retrieval and blocking with serum for 1 h, the slices were incubated with the primary antibodies at 4°C overnight; these antibodies included anti-inhba (Santa Cruz, sc-166503), anti-wnt3a (Santa Cruz, sc-74537), anti-col6a1 (Santa Cruz, sc-377143), anti-wnt16 (Santa Cruz, sc-271897), anti-fgf18 (Santa Cruz, sc-393471), anti-chrm1 (Santa Cruz, sc-365966), anti-ngf (Abcam, ab52987), and anti-gdf7 (Abcam, ab189928). After washing three times with PBS, the slices were subjected to related secondary antibodies for 1 hour at room temperature. They were then washed three times with PBS (5 min each time), followed by incubation with diamidino-phenyl-indole (DAPI) for 30 min. Images were taken by laser scanning confocal fluorescence microscopy (Leica SP8).
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4

Quantification of BDNF and NGF Expressing Cells

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The flow cytometric assay was used to quantify the BDNF- and NGF-positive cells in each group. Briefly, the cells were isolated with a cell scraper and centrifuged at 2000 rpm for 3 min. The cells were then incubated with anti-BDNF (1:100, Abcam) or anti-NGF (1:50, Abcam) with FITC-Goat anti-Rabbit Ab (1:200, Jackson Immuno-Research Labs) in binding buffer (BD science, Franklin Lakes, NJ, USA) for 10 min and then analyzed directly using FACS (Accuri C6 plus flow cytometer, BD Bioscience) after adding the same volume of PBS.
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5

Comprehensive Antibody Protocol for TGF-β1 Signaling

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The antibodies used in this study were as follows: anti-N-cadherin (Proteintech), anti-E-cadherin (Proteintech), anti-Vimentin (Proteintech), anti-NGF (Abcam), anti-BDNF (Abcam), anti-p-SMAD2/3 (CST), anti-ACTIN (Proteintech), SMAD2 (CST), SMAD3(Beyotime), HRP-conjugated secondary antibodies (Proteintech), and fluorescence-conjugated secondary antibodies (Proteintech). Recombinant human TGF-β1 (10804-HNAC) and recombinant mouse TGF-β1 (80116-RNAH) were purchased from Sino Biological (Beijing, China). HNK was purchased from MedChem Express (Monmouth Junction, NJ, USA).
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6

Immunohistochemical Analysis of Neurological Markers

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Brain coronal sections were used to perform immunohistochemical staining. Nonspecific binding was blocked with 1% bovine serum albumin/PBS (BSA, Sigma) for 30 minutes at RT. Subsequently, sections were incubated at 4°C overnight with primary antibodies as follows: anti‐O4 (1:500, Abcam), anti‐CD4 (1:200, Abcam), anti‐CD68 (1:200, Abcam), anti‐occludin (1:400, Bioworld), anti‐ZO‐1 (1:400, Bioworld), anti‐Iba‐1 (1:200, Abcam), anti‐iNOS (1:200, BD), anti‐NF‐κB (1:200, Abcam), anti‐GFAP (1:1000, Abcam), anti‐NGF (1:1:300, Abcam), anti‐CNTF (1:300, Abcam), and anti‐NG2 (1:500, Millipore). Subsequently, sections were incubated with Alexa Fluor 488/555‐conjugated secondary antibodies at RT for 2 hours. The fluorescent staining was visualized under fluorescent microscopy and analyzed by Image‐Pro Plus software in a blinded fashion. Quantification was performed on three sections per mouse.
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7

Protein Analysis of Ischemic Myocardium

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Fifty μg of protein was extracted from the ischemic myocardial tissues at 4 weeks after MI. The tissues were lysed in radioimmunoprecipitation assay (AS1004, Aspen, Wuhan, China), and lysis buffer and protein concentrations were determined using the BCA kit (AS1086, Aspen). The proteins were used for sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to nitrocellulose membranes. The membranes were blocked by incubation with 5% bovine serum albumin in a TBS-Tween buffer (10 mM Tris-HCl, 150 mM NaCl, and 0.5% Tween-20) for 1 hour at room temperature, and subsequently, incubated with different primary antibodies: rabbit anti-TH (Santa, Shanghai, China), anti-GAP43 (1:1,000; Abcam, Cambridge, UK), anti-NGF (1:500; Abcam), anti-CHAT (1:500; Bioss, Beijing, China), anti-VACHT (1:500; Abcam), or anti-GAPDH (1:10,000; Abcam) overnight at 4°C. After the membrane was washed three times, the blots were incubated with secondary HRP conjugated goat anti-rabbit antibody (1:10,000; Pierce, Rockford, IL, USA) for 30 minutes at room temperature. Membranes were detected by enhanced chemiluminescence (Beyotime Biotechnology, Jiangsu, China) and exposed to film in the dark. The optical density intensity of each band was measured using AlphaEaseFC software (Alpha Innotech Corp., San Leandro, CA, USA). Results are shown as the optical density ratio to GAPDH.
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8

Histological Analysis of Ischemic Brain Injury

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Rats were transcardially perfused with PBS and 4% paraformaldehyde 24 h after transient FCI/R (n = 3/group). The brain coronal sections from bregma at 0.3 to −1.8 mm were cut at 20 μm thickness. The sections were stained for hematoxylin and eosin (HE), terminal deoxynucleotidyl transferase- (TdT-) mediated dNTP nick end labeling (TUNEL), the expression of BDNF and NGF, and 8-hydroxy-deoxyguanosine (8-OHdG). Sections were incubated with primary antibody (anti-BDNF, Santa Cruz, USA; anti-NGF, Abcam Inc., Cambridge, MA; anti-8-OHdG, JaICa, Shizuoka, Japan) and then with the biotinylated secondary antibody. Negative controls performed the same staining procedure with the omission of primary antibody. HE staining was performed according to the standard procedure. TUNEL labeling assay kit (Roche Company, Switzerland) was used to measure DNA fragmentation. The number of HE-, TUNEL-, BDNF-, NGF-, and 8-OHdG-positive cells in the penumbra of ischemic ipsilateral parietal cortex in the ischemic area was quantified under a 400x magnification by a blinded investigator.
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9

Neural Stem Cell Culture Protocol

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NSCs culture medium was under support from Chi Scientific (Jiangsu, China). Anti-NGF, anti-LC3-II, anti-Beclin1, anti-P62, anti-NeuN, donkey anti-rabbit IgG and anti-mouse IgG with Alexa Fluor 594 (red) and Alexa-Fluor 488 (green) were supplied by Abcam (Cambridge, Britain). DAPI (4′,6-diamidino-2-phenylindole), a fluorescent agent used for nuclear staining, was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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10

Quantification of Neuronal Signaling Proteins

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Total proteins prepared from the brain tissue were separated by 4–20% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) for 2 h, after which resolved proteins were transferred to nitrocellulose membranes for 2 h at 40 V. Each membrane was then incubated separately at 4℃ with the following primary antibodies overnight: anti-NGF (Abcam), anti-TrkA (Cell Signaling, Danvers, MA, USA), anti-p-TrkA (Cell Signaling), anti-Akt (Cell Signaling), anti-p-Akt (Cell Signaling), anti-ERK (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-p-ERK (Santa Cruz Biotechnology), anti-p-75NTR (Abcam), anti-JNK (Cell Signaling), anti-p-JNK (Cell Signaling), anti-Bcl2 (Abcam), anti-Bax (Abcam), and anti-β-actin antibody (Sigma-Aldrich Co.). The membranes were then washed with washing buffer (137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 0.05% Tween 20) and incubated with HRP-conjugated goat anti-rabbit IgG (Invitrogen) and HRP-conjugated goat anti-mouse IgG (Invitrogen) at a 1:1,000 dilution and room temperature for 1 h. Membrane blots were developed using Amersham ECL Select Western Blotting detection reagent (GE Healthcare).
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