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Hoechst 33342 hoechst

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Hoechst 33342 (Hoechst) is a fluorescent dye used for the staining and identification of DNA in various biological applications. It functions by binding to the minor groove of double-stranded DNA, emitting a blue fluorescence when excited. Hoechst is commonly used in flow cytometry, fluorescence microscopy, and other techniques that involve the detection and analysis of DNA.

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5 protocols using hoechst 33342 hoechst

1

PHBV/PVA Composite Biofilm Preparation

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PHBV with a PHV content of 12 wt% was purchased from Goodfellow (Huntingdon, UK). Polyvinyl alcohol (PVA) (MW ~30,000), Ringer´s solution and Iron (II) chloride tetrahydrate were from Merck (Darmstadt, Germany). DCM, propidium iodide (PI), sodium citrate, triton X-100, acetone and lauric acid were obtained from Sigma-Aldrich (St. Louis, USA). Ammonia solution 25% and Iron (III) chloride hexahydrate were supplied by Roth (Karlsruhe, Germany). TCH was purchased from AppliChem (Darmstadt, Germany). RPMI 1640 medium, fetal calf serum (FCS), Annexin A5-FITC (Ax), Hoechst 33342 (Hoechst) and DiIC1 (5) were acquired from Thermo Fisher Scientific (Waltham, USA).
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2

Immunofluorescence Microscopy of Lysosomes

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Cells grown in 8-well microscopic coverslips (Sarstedt, 94.6170.802), reverse transfected with siRNAs or treated as indicated, were fixed and permeabilized with 4% paraformaldehyde and 0.2% Triton X-100. The slides were then blocked in 3% bovine serum albumin diluted in PBS, followed by 90 min incubation with primary antibodies. After washing three times, cells were incubated with secondary antibodies conjugated to Alexa Fluor-488 or -546. Nuclei and actin were labeled using Hoechst 33342 (Hoechst; Thermo Fisher Scientific, 62249) and conjugated phalloidin, respectively. Live cells were incubated with 200 nM Lysotracker DND-red-99 (Thermo Fisher Scientific Life Technologies, L7528) for 45 min to label acidic compartments and fixed with 4% paraformaldehyde after washing three times with PBS. The cells were visualized with a Zeiss LSM780 confocal microscope (Plan Neofluor 63×/oil NA 1.4 objective). Staining and microscopy conditions were kept identical for comparisons. Mean fluorescence intensity of puncta, the number of puncta per cell and colocalization quantifications were performed using available pipelines with some modifications in CellProfiler (Broad Institute of MIT and Harvard).
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3

Lipid Labeling Reagents for Cellular Studies

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Egg phosphatidylcholine (PC), egg phospatidylethanolamine (PE), egg phosphatidylinositol (PI) and bovine heart cardiolipin (CL) were from Avanti Polar Lipids. MitoTracker Red CMXRos (Mitotracker), AlexaFluor 488 C5Maleimide (Alexa 488), Alexa Fluor 647 C2Maleimide (Alexa 647), N,N’-Dimethyl-N-(Iodoacetyl)-N’-(7-Nitrobenz-2-Oxa-1,3-Diazol-4-yl)Ethylenediamine (NBD), 1,1’-Dioctadecyl-3,3,3′,3′-Tetramethylindodicarbocyanine Perchlorate (DiD), 3,3′-Dioctadecyloxacarbocyanine Perchlorate (DIO), and Hoechst 33342 (Hoechst) were from Thermo Fisher Scientific. 1, 3, 6, aminonaphtalene-tri-sulphonate (ANTS) and p-xilene-bis-dipicolyinic acid (DPX) were from Molecular Probes. All other reagents were from Sigma-Aldrich.
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4

Viability Assay for HepG2 Cells

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HepG2 cells in 75 mL culture flasks were trypsinized with 3 mL of 0.05% trypsin solution (Sigma, WI, USA), and incubated for approximately 5 min at 37 °C. The trypsin was neutralized by addition of complete culture medium, before the cultures were centrifuged at 1 000 r/min (radius = 98 mm) for 5 min. Cells were harvested and resuspended in medium, to ensure a single cell suspension. Cells were then counted on a hemocytometer based on the trypan blue dye exclusion method (0.4% trypan blue; Sigma-Aldrich, St Louis, MO, USA) by adding 10 μL of trypan blue solution to 10 μL of cell suspension (1:1, v/v). The cells were seeded at densities ranging from 500 to 6 000 cells per well in four replicates, using black, tissue culture treated, clear-bottom 384-multiwell plates. Cells were incubated for 24 h prior to treatment with varying concentrations (0.062 5%, 0.125%, 0.25%, 0.5% and 1.0%) of dimethyl sulfoxide (DMSO) solutions prepared with the complete medium. Cell cultures were then incubated for 24 h before staining with Hoechst 33342 (Hoechst) (Invitrogen, Eugene, OR, USA) and propidium iodide (PI) (Sigma, MO, USA), prepared in culture medium, at final concentrations of 5 and 10 μmol/L respectively for 1 h. Plates were imaged with an ImageXpress MicroXL high-content fluorescence microscope (Molecular Devices, Sunnyvale, CA, USA).
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5

Imaging Mitochondrial Dynamics in Cells

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For imaging, the cells were plated on a collagen-coated glass-bottom 35 mm dish (glass thickness 0.15–0.18 mm, Mat-tek). For measurement of mitochondrial length, the cells were cultured in phenol red-free DMEM. Mitochondria were labeled with 50 nM of MitoTracker Green FM (MTG; Invitrogen, Carlsbad, CA, USA), and nuclear DNA was labeled with Hoechst33342 (Hoechst; Invitrogen). Wide field observations of the cells were performed on a Nikon Ti-E inverted microscope using a 60 × objective (Nikon; CFI Plan Apo λ 60 × oil: NA 1.40) and the following filter sets (Semrock): for imaging of MTG, 482/18 excitation filter - dichroic mirror FF495-520/35 emission filter; and for imaging of Hoechst, 405/10 excitation filter - dichroic mirror FF495-520/35 emission filter. The exposure times were 200 ms for MTG and 400 ms for Hoechst. The microscope system was controlled with NIS-Elements (Nikon). Cells were illuminated using a xenon lamp through 12.5 and 25% neutral density filters. Fluorescence emissions from cells were captured with a Zyla4.2 sCMOS camera (ANDOR). Cells were maintained on the microscope at 37 °C with a continuous supply of a mixture of 95% air and 5% carbon dioxide using a stage-top incubator (Tokai Hit).
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