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17 protocols using xestospongin c

1

Measuring Calcium Influx in NHEKs

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[Ca2+]i was measured by a Fluo-4 NW Calcium Assay Kit (Life Technologies). Because the calcium ion concentration of the NHEK culture medium is low, we used low calcium contained-balanced salt solution (10 mM HEPES, pH7.4, 120 mM NaCl, 4 mM KCl, 1 mM KH2PO4, 1 mM MgCl2, 5 mM glucose, and 0.05 mM CaCl2) (Karvonen et al., 2000 (link)) instead of the Kit-included Assay buffer. To study calcium ion influx, cells were incubated with dye loading solution (balanced salt solution with Fluo-4 NW dye mix and 2.5 mM probenecid) at 37°C for 30 minutes, and then at room temperature for an additional 30 minutes. TIP39 peptide (5–25 μM), ionomycin (1 μM), thapsigargin (1 μM) (Enzo Life Science), bafilomycin A (0.5 μM) (Sigma-Aldrich), xestospongin C (5 μM), U73122 (5 μM), and W-7 (50 μM) (TOCRIS Bioscience, Bristol, UK) were added as indicated in dye loading solution, and then [Ca2+]i was monitored at an emission of 516 nm with excitation of 494 nm using a SpectraMax Gemini EM microplate Reader (Molecular Devices, Sunnyvale, CA) (Jiang et al., 2011 (link)). Fluo-4 signal changes (%) were defined as (F − F0)/F0 × 100. F was the target fluorescence signal intensity and F0 was the baseline calculated by averaging five time points just before the application of the stimulus.
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2

Electrophysiological Recordings with Diverse Solutions

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Normal aCSF was used in most cases for in vitro electrophysiological recordings. Ca2+-free solution was made by removing Ca2+ chloride from the recording solution and replacing it with an equimolar concentration of magnesium chloride. Low-Na+ solution was made by substituting equimolar concentrations of Na+ chloride by choline chloride. All solutions were oxygenated with 95% O2/5% CO2. All salt compounds, TEA (#T2265); TPPO (#T84603), L.A. (#L1376), BAPTA (#A9801); Caffeine (#C0750), NMA (#M2137), and 5-HT (#S2805) were obtained from Sigma-Aldrich. TTX (#1078), Chelerythrin (#1330), U73122 (#1268), Xestospongin-C (#1280), 9-Phenanthrol (#4999), Dantrolene (#0507), and Thapsigargin (#1138) were obtained from Tocris Bioscience. Dantrolene, Thapsigargin, Xestospongin-C, U73122, and 9-Phenantrol were dissolved in dimethylsulfoxide (DMSO) and added to the aCSF (final concentration of DMSO: 0.05–0.1%). L.A. was dissolved in ethanol and added to aCSF (final concentration of ethanol: 0.05–0.1%). Control experiments showed no effects of the vehicle. The other drugs were dissolved in water and added to the aCSF.
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3

Cellular Signaling Pathway Modulation

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Forskolin (F6886), IBMX (I7018), LRE1 (SML1857), 8-Br-cAMP (B7880), BrdU (B5002), dynasore (D7693), (−)-isoproterenol (I6504), barbadin (SML3127), BAPTA-AM (A1076), ionomycin (I0634), and Dowex–Alumina resins were from Sigma. Dyngo-4a (D4a; ab120689) was from Abcam. [2,8-3H]-Adenine (NET063001MC) was from Perkin Elmer. TSH (TSH-1315B) was from Creative Biomart. U73122 (1268), JTV-519 fumarate (4564), and Xestospongin C (1280) were from Tocris. FR-900359 (33666) was from Cayman Chemical. The Nano-Glo Endurazine Live Cell Substrate prototype (Fz-4377), a degradation-resistant derivative of Furimazine, was from Promega. KH7 and its inactive analog KH7.15 were provided by Drs Buck-Levin (Cornell).
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4

Standardized Pharmacological Stimulation for Tissue and Organoid Imaging

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Stimulant stock solutions were prepared according to
manufacturer’s instructions. For mucus measurement and tissue imaging
experiments 10 μM Cch (Sigma Aldrich) was provided basolaterally.
Stimulants were added to tissue culture medium for organoid imaging experiment
at the following concentrations: acetylcholine (20 μM; Sigma Aldrich),
Cch (20 μM; Sigma Aldrich), forskolin (100 nM; Cayman Chemical) and
nicotine (10 μM; Sigma Aldrich).
Inhibitor stock solutions were prepared according to
manufacturer’s instructions. For mucus measurement and tissue imaging
experiments 4-DAMP (100 nM; Cayman Chemical) was supplied basolaterally. For
organoid imaging experiments inhibitors were added to tissue culture medium and
incubated with cells for 10 minutes prior to stimulation with Cch. Inhibitors
were used at the following concentrations; atropine (50 μM; Sigma
Aldrich), physostigmine salicylate (10 μM; Sigma Aldrich), tetraisopropyl
pyrophosphoramide (10 μM; Sigma Aldrich), 4-DAMP (100 nM),
(−)-Xestospongin C (10 μM; Tocris), SKF 96365 (10 μM;
Tocris), carbenoxolone (50 μM; Sigma Aldrich), bumetanide (50μM;
Sigma Aldrich), clotrimazole (30 μM; Sigma Aldrich), Chromanol 293B (10
μM; Sigma Aldrich) and Ryanodine (100 nM; Tocris).
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5

Neurotransmitter Regulation of NGF Signaling

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Drugs were dissolved in HBSS, which was used as the experimental vehicle, and applied directly to the media containing NGF. Drugs concentrations are based on published literature: choline (Acros Organics, Geel, Belgium) (10 mM, 3 mM, and 1 mM) [22 (link)]; α-bungarotoxin (Thermofisher) (BGTX) (50 nM) [32 (link)]; calpeptin (Sigma Aldrich, St. Louis MO, USA)(26 μM) [33 ], ryanodine (Santa Cruz) (30 μM) [21 (link)]; Xestospongin C. (Tocris Biosciences, Bristol, UK.) (Xest C.) (1 μM) [20 (link)]; FK506 (Tocris Biosciences) (40 μM) [34 (link)]; Substance P (Tocris Biosciences) (Sub P) (1 μM) [20 (link)]; PNU 282987 (Tocris Biosciences) (10 μM) [35 (link)].
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6

Synthesis and Characterization of PCB 11

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PCB 11 (3,3’-dichlorobiphenyl, CAS # 2050-67-1) was synthesized by Dr. Hans-Joachim Lehmler (The University of Iowa, Iowa City, IA) and confirmed to be > 99% pure as determined by 1H NMR, 13C NMR, and GC-MS (Sethi et al. 2017 (link)). Map2B-pCAG-fusion protein red (FusRed) and short hairpin cAMP response element binding (shCREB) cDNA constructs were generous gifts from Dr. Gary Wayman (University of Washington, Pullman, WA) and have been previously characterized (Wayman et al. 2006 (link)). Scrambled shRNA control was purchased from Santa Cruz Biotechnology (Santa Cruz Biotechnology Inc., Dallas, TX). FLA 365 (Chen et al. 2016 (link)) and NH3 (Singh et al. 2016 (link)) were synthesized by Dr. Heike Wulff (University of California Davis, Davis, CA). CH 223-191, 666-15, and xestospongin C were purchased from Tocris (Bio-Techne, Minneapolis, MN). Verapamil and triiodo-L-thryonine were purchased from Sigma-Aldrich (St. Louis, MO). TCDD was provided by Dr. Stephen Safe (Texas A&M University, College Station, TX). The GH3.TRE-Luc cell line was generously provided by Dr. Dave Furlow (University of California Davis, Davis, CA). All stock solutions were made in dry sterile dimethylsulfoxide (DMSO, Sigma-Aldrich).
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7

Methylglyoxal-Induced Cell Stress Responses

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Methylglyoxal, 3‐(4,5‐dimethylthiazol‐2‐yl)‐2,5‐diphenyltetrazolium bromide (MTT), N‐acetylcysteine (NAC), 4‐phenyl butyric acid (4‐PBA), MRS1845, YM‐58483, caffeine, dichlorodihydrofluorescein diacetate (H2DCFDA), dihydroethidium (DHE) and propidium iodide (PI) were obtained from Sigma‐Aldrich Co (St Louis, MO, USA). Xestospongin C was purchased from Tocris Bioscience (Bristol, UK). Z‐Val‐Ala‐Asp‐fluoromethylketone (z‐VAD‐FMK), salubrinal and 1,2‐bis(2‐aminophenoxy)ethane‐N,N,N′,N′‐tetraacetic acid tetrakis/acetoxymethyl ester (BAPTA/AM) were purchased from Calbiochem (Darmstadt, Germany). The antibodies specific for caspase‐3, caspase‐9, eIF2α, phospho‐eIF2α and poly(ADP‐ribose) polymerase 1 (PARP1) were purchased from Cell Signalling Technology (Beverly, MA, USA). The antibodies specific for glucose‐regulated protein 78 (GRP78), CHOP, PERK, phospho‐PERK and β‐actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The antibodies specific for ATF4, ATF6, IRE1β and XBP1 were purchased from Abcam (Cambridge, UK).
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8

Pharmacological Modulators of Cellular Mechanobiology

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The pharmacological and small‐molecule inhibitors and agonists used were the following: 7rh (2.5 µm; Sigma) for DDR1 inhibition, rat anti‐human CD29 (1:100; BD Bioscience) to block integrin β1, blebbistatin (1 µm; Enzo Life Sciences) for myosin II inhibition, GM6001 (10 µm; Calbiochem) as broad‐spectrum MMP inhibitor, L‐mimosine (400 µm; Santa Cruz Biotechnology) to arrest the cell cycle at G1, S‐trityl‐L‐cysteine (STLC; 20 µm; Santa Cruz Biotechnology) to arrest at mitosis, ionomycin (10 µm; MedChemExpress) to increase cell membrane permeability to calcium, gadolinium chloride (10 µm; MedChemExpress) to inhibit mechanosensitive calcium channels, BAPTA (10 µm; MedChemExpress) to chelate extracellular calcium, BAPTA‐AM (10 µm; MedChemExpress) to chelate intracellular calcium, arachidonic acid (70 µm; MedChemExpress) to mimic signaling downstream of nuclear mechanosensing, AACOCF3 (28 µm; Tocris) to inhibit signaling downstream of nuclear mechanosensing, 2‐aminoethoxydiphenylborane (20 µm; MedChemExpress) as IP3 receptor agonist, Xestospongin c (10 µm; Tocris) as IP3 receptor agonist, GSMT×4 (10 µm; MedChemExpress) as Piezo 1 inhibitor, Yoda1 (6 µm; MedChemExpress) as Piezo 1 agonist, GSK205 (10 µm; MedChemExpress) as TRPV4 inhibitor, and GSK1016790A (50 µm; MedChemExpress) as TRPV4 agonist.
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9

Cardiomyocyte Stimulation Inhibitor Assay

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The chemical reagents and recombinant proteins were obtained from different companies: “Spectrum Collection” (MicroSource Discovery Systems, Inc., 10 mM stock solutions in dimethylsulfoxid (DMSO), purity > 90%), 6-bromoindirubin-3'-oxime (BIO), osajin, peruvotoxin, efaroxan hydrochloride, xestospongin C (Tocris bioscience), SB203580 (Calbiochem), fibroblast growth factor 1 (FGF1, R&D Systems), convallatoxin (Sigma), valeryl salicylate, bpV(HOpic) (Santa Cruz Biotechnology). Inhibitors were added 1 h before cardiomyocyte stimulation.
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10

Pharmacological Modulation of Neuronal Activity

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Stocks were prepared at 1000X (or greater) by dissolving TTX (Calbiochem) and MPEP in water; FK506, KN62, Xestospongin C, and CPCCOEt (Tocris) in DMSO. All drugs were applied at least 20 min prior to HFU stimulation.
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