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Protease inhibitor cocktail

Manufactured by Transgene
Sourced in China

Protease inhibitor cocktail is a laboratory reagent designed to inhibit the activity of proteases, which are enzymes that break down proteins. The cocktail contains a combination of specific protease inhibitors that target a wide range of protease classes, providing a broad-spectrum inhibition. This product is commonly used in various research applications, such as protein extraction and purification, to prevent unwanted protein degradation during sample processing.

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11 protocols using protease inhibitor cocktail

1

Immunoprecipitation of GFP-tagged Proteins in HEK293T Cells

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HEK293T cells transfected with indicated plasmids for 48 h were lysed in the lysis buffer (20 mM HEPES, pH 7.9, 300 mM NaCl, 3 mM MgCl2, 0.1% NP-40) containing Protease Inhibitor Cocktail (Transgene, DI101-01) and 10 mM sodium butyrate for 30 min at 4 °C with rotation. After a 20 min centrifugation at 18,800 × g at 4 °C, the supernatants were collected and separated into input and immunoprecipitated (IP) lysates. IP lysates were mixed with a GFP specific antibody overnight at 4 °C, and then were immunoprecipitated with 25 μl DynabeadsTM Protein G (pre-washed with PBS buffer three times, Invitrogen) for 4 h at 4 °C. After washing with the same IP lysis buffer, IPs were released by adding 2× Protein Loading Buffer (TransGen Biotech) to beads and subjected to western blotting.
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2

Protein Extraction and Cell Lysate Analysis

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Protein extraction and cell lysates were prepared using RIPA protein extraction reagent (Beyotime, Beijing, China) supplemented with a protease inhibitor cocktail (Transgen Biotech, China). GAPDH (ZSJQB Co., Ltd., Beijing) was used as a control. BRMS1 (ab134968) and EZH2 (ab186006) were purchased from Abcam.
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3

Evaluating Protein Expression Profiles

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Using a Mammalian Total Protein Extraction Kit and a protease inhibitor cocktail, the cells' total proteins were extracted (Transgen, Beijing, China). In a nutshell, 10% SDS–polyacrylamide gel electrophoresis was used to separate the proteins. Following that, the proteins were transferred to PVDF membranes. Specific primary antibodies (Abcam, UK) were incubated with the PVDF membranes for an extended period of time at 4 °C in order to identify PD-L1, P65, p-P65, and GAPDH. The membranes were then exposed to peroxidase-conjugated secondary antibodies for two hours at room temperature. Finally, an enhanced chemiluminescence assay was used to see the Western blotting bands (ECL; Thermo Fisher, USA).
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4

Analyzing PD-L1 expression in HCC cells

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HCC cells were treated with 10 μM olaparib or dimethyl sulfoxide (DMSO) after 24 hours. Using a Mammalian Total Protein Extraction Kit and a protease inhibitor cocktail (Transgen, China), cellular proteins were extracted. Proteins were placed onto SDS-polyacrylamide gel and then transferred to polyvinylidene fluoride (PVDF) membranes (Wobixin Inc., China). Membranes were blocked with 5% skim milk for 1.5 hours after being rinsed with Tris-buffered saline and 1% Tween 20 (TBST, zsbb-bio, China). Then, at 4°C, we incubate with the primary antibody against: PD-L1 (ab213524, 1 : 1000 dilution) and GADPH (ab9485, 1 : 2500 dilution). The Western blot bands were detected using an enhanced chemiluminescence assay and a peroxidase-conjugated secondary antibody (CST, Sigma-Aldrich, USA).
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5

Protein Extraction and Western Blot Analysis

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The total protein in the cell or sEVs was extracted with the RIPA lysis buffer by using the Protease Inhibitor Cocktail (Transgen, China). The protein concentration was quantified using the BCA protein assay kit, and the protein was subjected to denaturation in boiling water for 10 min. Then, 20 μg of the protein was loaded and separated by 10% SDS‐PAGE and then transferred onto a 0.45‐μm PVDF membrane (Mllipore, USA), followed by blocking in 5% non‐fat milk for 1 h at room temperature. The membrane was incubated with the antibodies to LRP1, Alix, CD63, CD9, HA, EGFP, Calnexin and β‐actin at 4°C overnight. The membrane was washed with TBST thrice, after which the membrane was incubated with HRP‐conjugated secondary antibody at room temperature for 2 h. The protein bands were visualised using the ECL kit(Vazyme, China) and LAS4000 imaging system (Fuji Film, Japan).
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6

Western Blot Analysis of TMEM30A

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The TA muscles were lysed in RIPA lysis buffer with protease inhibitor cocktail and ethylenediaminetetraacetic acid (EDTA) (TransGen, China). Protein concentration was determined using a BCA Protein Assay (TransGen, China). Equal amounts of protein were loaded onto a 10% polyacrylamide gel, then separated and transferred to nitrocellulose membranes (Merck Millipore, Germany). Blots were blocked with 8% non-fat dry milk in Tris-buffered saline and Tween 20 (TBST) for 2 h at room temperature and then incubated with primary antibodies in blocking solution overnight at 4 °C. The primary antibodies included TMEM30A (rabbit polyclonal, ab217330, Abcam, USA) and GAPDH (mouse monoclonal, 60004-1-Ig, Proteintech, USA). Primary antibodies were detected with either an anti-mouse or anti-rabbit horseradish peroxidase-conjugated secondary antibodies (Bio-Rad Laboratories, USA), and signals were developed using a SuperSignal West Pico Chemiluminescent Substrate (Pierce Protein Biology, USA). ImageJ (v1.8.0) was used to calculate the relative density of the protein.
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7

Western Blot Analysis of Protein Samples

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The cells were harvested and processed with RIPA lysis buffer (CST Biological Reagents Co., Ltd.) supplemented with phenylmethylsulphonyl fluoride (Thermo Fisher Scientific, Inc.), protease inhibitor cocktail (TransGen Biotech Co., Ltd.) and phosphatase inhibitor cocktail (TransGen Biotech Co., Ltd.). Western blotting was performed as described below, and the protein samples (20 µg) were separated on 10% gels using SDS-PAGE, and then electro-transferred onto PVDF membranes (Immobilon-P; MilliporeSigma). After blocking with 5% bovine serum albumin (MilliporeSigma) in Tris-buffered saline containing 0.05% Tween 20 for 1 h at room temperature, the PVDF membranes were incubated overnight with the primary antibodies at 4˚C. Following incubation with the corresponding secondary antibodies for 1 h at room temperature, protein chemiluminescence was detected using the BeyoECL Plus kit (Beyotime Institute of Biotechnology) in a KETA GL Imaging System (Wealtec Corp.), and the gray value of the band was quantified using ImageJ (version 1.51; National Institutes of Health). β-actin was used as the control.
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8

Co-Immunoprecipitation Assay Protocol

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The pierce classic IP kit (Thermo scientific 26,146) was used to perform Co-IP assay. In brief, HEK293T cells were lysed with IP lysis buffer (0.025 M Tris, 0.15 M NaCl, 0.001 M EDTA, 1% NP-40, 5% glycerol, 1% protease inhibitor cocktail, pH 7.4) (TransGen Biotech) for 15 minutes on ice with brief vertaxing every 5 minutes. Then pre-clear lysates were prepared using the control agarose resin. The pre-clear lysates were collected and incubated with 2–10 μg anti-FLAG antibody overnight at 4 °C with rotating to form immune complexes. Protein A/G plus agarose was added to the antibody/lysate sample and the incubated mixture was gentle shook for an hour. The immunoprecipitates were washed 4 times with ice-cold STN buffer, eluted by boiling SDS loading buffer and separated by SDS-PAGE for western blotting.
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9

Identifying Phosphorylation Sites in Proteins

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Phosphosite identification was performed using a well-established protocol (Cai et al., 2018) . N. benthamiana leaves transiently expressing GFP-SlREM1 and 33HA-SlREM1 at 2 dpi were harvested, ground in liquid nitrogen, and lysed in immunoprecipitate buffer (50 mM of Tris-HCl at pH 7.5, 150 mM of NaCl, 1% [v/v] NP-40, 50 mM of MG132, 1 mM of phenylmethylsulfonyl fluoride, 1 3 protease inhibitor cocktail [Roche], and 1 3 phosphatase inhibitor mixture [Transgene] ). The lysis solution was centrifuged at 14,000 3 g at 4°C for 15 min. The supernatant was incubated with GFP-trap (Chromotek) and HA antibodycoated agarose (Abmart) for 4 h at 4°C, respectively. Finally, the proteins were eluted using 0.1 M of Gly-HCl (pH 2.5), reduced with 5 mM of dithiothreitol, alkylated with 10 mM of iodoacetamide, and then digested with trypsin (Promega). The tryptic peptides were identified by liquid chromatography tandem MS and phosphorylation sites were analyzed with the software ProteinPilot 5.02 (AB SCIEX).
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10

Western Blot Analysis of Notch Signaling

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Cells were lysed with ice-cold radio immunoprecipitation assay (RIPA) buffer (TRANSGEN Biotech, Haidian, Beijing, China) containing protease inhibitor cocktail (TRANSGEN Biotech, Haidian, Beijing, China). Proteins which was concentrated by a BCA Kit (Pierce, Hangzhou, Zhejiang, China) in the lysates were separated by SDS-polyacrylamide gel electrophoresis and transferred to PVDF membranes. The 5% (wt/vol) nonfat milk was used for membranes block. Subsequently, the membranes were incubated with primary antibodies specific for ZEB1 (1:600; Abcam, Cambridge, MA, USA), GAPDH (1:2000; Yunshan Technology, Pudong, Shanghai, China), Jag1 (1:700; CST, Danvers, MA, USA), Maml2 (1:600; Abcam, Cambridge, MA, USA) or Hey1 (1:700; CST, Danvers, MA, USA). PBS containing 0.05% Tween was used to wash the membranes which further used for the incubation of the appropriate secondary antibodies. The levels of proteins were visualized using ECL reagents (Beyotime, Pudong, Shanghai, China) and imaged by ECL System (GE Healthcare, Milan, Italy). ImageJ software was applied to analyze the optical density of the protein bands.
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