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8 protocols using thalidomide

1

Evaluating Myeloma Drugs in vitro

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Thalidomide, lenalidomide, pomalidomide, bortezomib and carfilzomib were purchased by Selleck Chemicals LLC (Houston, TX, USA). Reserpine, doxorubicin, dexamethasone and melphalan were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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2

CAR-T Cells Coculture with M2 Macrophages

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The 5×105 THP-1 cells/well or 1×106 PBMCs were seeded into the six-well plates and polarized into M2 macrophages. After thoroughly washing to remove all PMA and cytokines, the macrophages were cocultured with CAR-T cells and Raji cells. The ratio of CAR-T cells, tumor cells, and macrophages was 1:3:1. In some experiments, the cells were treated with thalidomide (1 µM), VX-765 (20 µM), Ac-YVAD-CMK (10 µM), prazosin (10 µM), propranolol (10 µM), or epinephrine (1 µM) (Selleck Chemicals).
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3

Characterization of Prostate Cancer Cell Lines

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All cell lines were originally obtained from ATCC, DSMZ, ECACC, Lonza, or internal stock. CWR-R1 and LNCaP parental/enzalutamide-resistant (LNCaP-EnzR) cells were gifts from D. Vander Griend (University of Illinois at Chicago). All cells were genotyped every 6 months to ensure their identity at the University of Michigan Sequencing Core and tested every 2 weeks for Mycoplasma contamination. Gibco RPMI-1640 + 10% FBS (ThermoFisher) were used for LNCaP, 22RV-1, CWR-R1, PC-3, and DU145 cells. VCaP was grown in Gibco DMEM Glutamax + 10% FBS (ThermoFisher). CBPD-409 and CBPD-409-Me were synthesized in Dr. Shaomeng Wang’s lab (see Supplementary Methods). GNE-049, CCS1477, A485, JQAD1, enzalutamide, carfilzomib, and thalidomide were purchased from Selleck Chemicals. Dcbp1 was purchased from MedChemExpress.
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4

Cell Viability Assay for PROTAC Compounds

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HCT116 WT or trRpn13 cells were seeded at 4000 cells/well whereas RPMI 8226 WT, trRpn13-MM1, or trRpn13-MM2 cells were seeded at 8000 cells/well with RPMI 1640 medium (no phenol red, Thermo Fisher Scientific 11835030) containing 2% fetal bovine serum in 96-well plates. After 24 h, cells were treated with 0.4% DMSO (as a control) and this concentration was maintained with XL5, XL5-PROTACs XL5-VHL, XL5-VHL-2, XL5-CRBN, XL5-IAP, E3 ligand VHL-ligand, thalidomide (Selleckchem, catalog NO. S1193), or IAP-ligand at 10 µM, 20 µM, 30 µM, or 40 µM concentration. RPMI 8226 WT, trRpn13-MM1, trRpn13-MM2, or MM.1S cells were treated similarly but with XL5-VHL-2 at 2.5 µM or 5 µM concentration. Each condition was performed in sextuplicate. After 48 h, 0.35 mg/mL MTT was added for 4 h of incubation. Stop solution (40% DMF, 10% SDS (W/V), 25 mM HCl, 2.5% acetic acid in H2O) was added to the cells and incubated overnight. Absorbance at 570 nm was measured by using CLARIOstar (BMG LABTECH).
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5

Modulation of S-DEP Injury by Pharmacological Agents

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Thalidomide (Selleck Chemicals, Houston, TX, USA catalog S1193, 25 mg/kg), TAPI-0 (TNF-α Protease Inhibitor-0, Santa Cruz Biotechnology, Santa Cruz, CA, USA catalog sc-203410, 1 mg/kg) or tea polyphenols (Abcam, Cambridge, UK, catalog ab141940, 25 mg/kg) were intraperitoneally injected two times, once 24 h before S-DEP and once 30 min before S-DEP. Equal volume of saline was injected as control. Purity of tea polyphenols, determined by high-performance liquid chromatography, was over 95%. Tea polyphenols comprise four major epicatechin derivatives; epicatechin [8 (link)], epigallocatechin, epicatechin gallate, and epigallocatechin gallate.
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6

Small Molecule Combination Therapy

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Filanesib was provided by Array BioPharma Inc. (Boulder, CO, USA). Thalidomide, lenalidomide and pomalidomide were purchased from Selleckchem (Houston, TX, USA), dexamethasone from Sigma-Aldrich (St Louis, MO, USA) and bortezomib from LC Laboratories (Woburn, MA, USA).
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7

TNF-α Modulation in Ankylosing Spondylitis

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Tumor necrosis factor-α (TNF-α) was purchased from MedChemExpress. Pomalidomide (anti-TNF-α; Selleck Chemicals) is a derivative of thalidomide and inhibits TNF-α release induced by lipopolysaccharide (23 (link)). It has been reported that as an analogue of thalidomide, pomalidomide exhibits antiapoptotic, antiangiogenic and immunomodulatory activities (24 (link),25 (link)).
PBMCs were collected from three groups: Healthy individuals (control); patients with AS prior to treatment (AS/Before treatment) and patients following treatment with infliximab (After treatment). PBMCs were then assigned to five groups: PBMCs not treated with TNF-α or anti-TNF-α (control); PBMCs cultured with 1, 5 and 10 ng/ml TNF-α; and PBMCs cultured with 2 µM pomalidomide (2 µM anti-TNF-α).
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8

Modulation of Pancreatic Cancer Cell Growth

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Panc02 cells, derived from C57BL/6J mice, were kindly provided by Dr. M. Li (Baylor College of Medicine, Houston, Texas 77030, USA). The Colo357 cell line was provided by prof. Helmut Friess (Technical University Munich, Munich, Germany). PC cells were maintained in low glucose (5 mM; LG) Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 100 U/ml penicillin and 100 μg/ml streptomycin and incubated at 37°C in 5% CO2. Various amounts of glucose were added to the culture medium to create cell growth environments containing different concentrations of glucose. In addition, 10 μM SB203580 (Sigma-Aldrich, St. Louis, MO, USA) or 10 ng/ml TGF-β (PeproTech, Rocky Hill, USA) was added to the culture medium. Caffeic acid phenethyl ester (CAPE) and thalidomide were purchased from Selleck Chemicals (Houston, TX, USA).
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