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13 protocols using ab216995

1

NLRP1 Activation and Autophagy Signaling

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The NLRP1 activator muramyl dipeptide (MDP) (Selleck, USA) was then added at 100 μmol for 24 hours to the oxidative stress model according to the preliminary experiment and the published studies [21 (link)–24 (link)]. The cell viability determination was the same as that in Section 2.1.
Total protein from HTR-8/SVneo cells was prepared with RIPA lysing buffer. The sample proteins (20 μg) of the different groups were separated using 10% SDS-PAGE and transferred onto PVDF membranes. These membranes were incubated with a primary antibody, followed by incubation of the anti-rabbit IgG secondary antibody. Protein expression was detected with an enhanced chemiluminescence detection kit. GAPDH served as an internal control. The antibodies included those for IL-1β (Abcam, ab216995), pro-IL-1β (Abcam, ab216995), pro-CASP1 (Abcam, ab207802), CASP1 (Abcam, ab207802), Beclin-1 (Abcam, ab207612), LC3 (Abcam, ab51520), p62 (Abcam, ab211324), ATG5 (Abcam, ab108327), ATG7 (Abcam, ab52472), NLRP3 (Abcam, ab263899), NLRP1 (BioLegend, 679802), and GAPDH (Abcam, ab128915). An ECL chemiluminescent reagent and imaging system (Bio-Rad, USA) were used to display protein bands, with the collected images analyzed using Bio-Rad software.
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2

NLRP3 Inflammasome Activation Assay

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Total proteins were extracted from HK2 cells on ice using a high-efficiency lysis buffer (Solarbio, Beijing, China). Protein concentration was determined using the BCA kit (Beyotime, Shanghai, China), 50 μg from each sample separated via SDS-PAGE (10% gel), then transferred onto polyvinylidene fluoride membranes. The membranes were incubated overnight with primary antibodies against NLRP3, IL-1β, and IL-18, with GAPDH as an internal control. Next, the membranes were incubated with corresponding secondary antibodies for 2 h. Signals were visualized using an chemiluminescence imaging system (Amersham Imager 680, cytiva, America), and protein expression analyzed using ImageJ software (National Institutes of Health Software, Bethesda, Maryland). The following antibodies were used for protein detection: Anti-NLRP3 (Abcam, ab263899; 1:1,000), anti-IL-1β (Abcam, ab216995; 1:500), anti-IL-18(Abcam, ab207324; 1:500).
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3

Quantification of Inflammatory Cytokines in HFLS Cells

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HFLS cells were lysed with RIPA lysate (Beyotime). Total proteins were separated by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes (Millipore). The membranes were incubated with 5% skimmed milk for 1 h, and incubated overnight at 4℃ with primary antibodies against interleukin‐1β (IL‐1β) (1:1000, ab216995; Abcam), interleukin‐6 (IL‐6) (1:1000, ab233706; Abcam), tumour necrosis factor‐α (TNF‐α) (1:1000, ab215188; Abcam), and GAPDH (1:1000, ab8245; Abcam). After washing, the membranes were incubated with a secondary antibody (1:5,000; Biotech) at room temperature for 4 h. The signals were developed using Pierce ECL Western Blot Substrate (Thermo Fisher Scientific), imaged, and analyzed with GAPDH as the control using ImageJ software.
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4

Western Blotting Analysis of Inflammatory Markers

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Western blotting was performed using antibodies against calpain-2 (Cat. 2,539, 1:1,000; Cell Signaling Technology), IL-6 (ab233706,1:1,000; Abcam, Cambridge, United Kingdom), TNF-α (ab183218,1:1,000; Abcam, Cambridge, United Kingdom), IL-1β (ab216995,1:1,000; Abcam, Cambridge, United Kingdom), p-STAT3 (Tyr705) (Cat. 9,145, 1:1,000; Cell Signaling Technology), STAT3 (Cat. 5,345, 1:1,000; Cell Signaling Technology), and GAPDH (Cat. 2,118, 1:5,000; Cell Signaling Technology). Next, the proteins were probed with horseradish peroxidase (HRP)-conjugated secondary antibodies and visualised using a ChemiDoc Imaging System (Bio-Rad Laboratories, Hercules, CA, United States). The relative quantity of proteins is presented as the ratio of target proteins to GAPDH.
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5

Western Blot Analysis of Inflammation Markers

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Cells were lysed in cell lysis buffer (Thermo Fisher Scientific, Pittsburgh, USA). The protein concentration in the cell homogenate was determined using a bicinchoninic acid (BCA) assay kit (Beyotime, Shanghai, China). SDS-PAGE separated the proteins (30 μg), which were subsequently transferred onto polyvinylidene fluoride (PVDF) membranes (Biorbyt, Cambridge, UK). After blocking with 5 % skim milk for 2 h, the membranes were incubated overnight at 4 °C with rabbit antibodies against GBP5 (1:2000, 13,220–1-AP, Proteintech, Wuhan, Hebei, China), IRF1 (1:1000, 8478s, CST, Boston, USA), MMP9 (1:1000, ab228402, Abcam, MA, USA), MMP13 (1:1000, bs10581 R, Bioss, Boston, MA, USA), COL2A1 (1:1000, ab34712, Abcam), aggrecan (1:1000, AF6126, Beyotime), Sox9 (1:1000, BS1597, Bioworld, Nanjing, Jiangsu, China), NLRP3 (1:1000, bs1001 R, Bioss), Caspase1 (1:1000, BS5641, Bioworld), GSDMD (1:1000, ab219800, Abcam), Pro-IL-1β (1:1000, ab216995, Abcam), Pro-Caspase1 (1:1000, ab179515, Abcam), and GAPDH (1:1000, 5174s, CST, Boston, USA). Subsequently, the membranes were incubated with secondary antibodies (1:20,000, BS13278, Bioworld) at room temperature for 1.5 h. After washing the membranes in TBST, chemiluminescent signals were detected using a Bio-Rad Molecular Imager ChemiDocTM XRS + system (Bio-Rad, Hercules, CA, USA), with GAPDH serving as the loading control.
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6

Inflammatory Pathway Protein Analysis

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RIPA lysis buffer (Bolingkewei, Beijing, China) was applied to homogenize the tissues. The whole protein was extracted and quantified using a bicinchoninic acid (BCA) protein assay kit (Pierce, Rockford, IL, USA). The protein (35 μg/lane) was isolated through 12% SDS-PAGE gels, followed by transferring onto polyvinylidene difluoride (PVDF) membranes (Millipore, MA, USA). After 1 h incubation with 5% defatted milk, membranes were probed at 4°C overnight against the following antibodies: NLRP3 (ab263899, Abcam), IL-18 (ab243091, Abcam), cleaved caspase-1 (orb126550, Biorbyt), IL-1β (ab216995, Abcam), N-cadherin (ab76011, Abcam), E-cadherin (ab40772, Abcam), fibronectin (ab2413, Abcam), vimentin (ab92547, Abcam), and β-actin (ab8226, Abcam). On the following day, membranes were exposed to goat anti-mouse (ab6789, Abcam) or goat anti-rabbit (ab6721, Abcam) HRP-conjugated secondary antibodies for 2 h at room temperature. Eventually, the signals were developed with an enhanced chemiluminescence system (Millipore, USA), followed by quantification with ImageJ software (NIH, Bethesda, Maryland, USA).
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7

Inflammasome Protein Expression Analysis

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Proteins were extracted and quantified using radio immunoprecipitation assay (RIPA) buffer (Biovision, American) and a protein concentration detection kit (absin, Shanghai, China). The prepared protein was separated by polyacrylamide-sodium dodecyl sulfate (SDS) gels and then transferred onto polyvinylidene fluoride (PVDF) membranes (Roche, Switzerland). Next, the membranes were incubated overnight at 4 ℃ with polyclonal antibodies: cleaved-caspase-1 (#4199T, 1:1,000, Cell Signaling Technology, USA), NOD-like receptor family pyrin domain containing 3 (NLRP3) (ab263899, 1:1,000, Abcam, UK), apoptosis-associated speck-like protein containing a CARD (ASC) (#13833S, 1:1,000, Cell Signaling Technology, USA), gasdermin D (GSDMD)-N (ab215203, 1:1,000, Abcam, UK), interleukin (IL)-1β (ab216995, 1:1,000, Abcam, UK), IL-18 (ab243091, 1:1,000, Abcam, UK), and β-actin (ab8226, 1:1,000, Abcam, UK). After washing with Tris-HCl buffered saline with 0.1% (v/v) Tween 20 (TBST), the membranes were incubated with a secondary antibody, and protein expression intensity was determined by enhanced chemiluminescent (ECL) kit (Beyotime, Beijing, China).
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8

Western Blot Analysis of Cardiac Proteins

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Protein from rat heart or cells was separated through 10% sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS‐PAGE) and transferred to PVDF membrane (Millipore, USA). Five percent non‐fat milk was used to block the membrane for 1 hr at room temperature and then the protein on the membrane was incubated overnight with primary antibody at 4°C. Secondary antibodies were used for 1 hr at room temperature and enhanced chemiluminescence (Millipore, USA) was used for exposure via Amersham Imager 600 (General Electric Company, USA).We used the antibody against bcl‐2(abcam, ab180665), bax(novusbio, NBP1‐78977SS), cleaved caspase‐3(abcam, ab216995), caspase‐3(abcam, ab216995), collagenIII (novusbio, NB600‐594SS), collagenI (novusbio, NBP1‐30054), MMP2 (Proteintech, 10373‐2‐AP), MMP9 (Proteintech, 10387‐2‐AP), p‐PI3K (CST, 4228), PI3K (CST, 4292), p‐Akt (abcam, ab38449), Akt (abcam, ab179463), p‐mTOR (abcam, ab109268), mTOR (abcam, ab2732), p‐eNOS (abcam, ab230158), eNOS (CST,32027) and β‐actin (abcam, ab8227) for detection.
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9

Protein Expression Analysis of Inflammatory Markers

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Total cellular proteins were prepared using ice-cold RIPA buffer containing 1% halt protease inhibitor (Beyotime). Proteins (50 µg/sample) were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were blocked with 5% non-fat milk followed by incubation with primary anti-IL-6 (ab214429), anti-TNF-α (ab183218), anti-IL-1β (ab216995), anti-IL-18 (ab207324), anti-NLRP3 (ab270449), anti-ASC (ab155970), anti-GSDMD-N (ab215203), anti-β-actin (ab8226) (1:1,000, Abcam, USA), and anti-cleaved caspase-1 (#89332) (1:1,000, Cell Signaling Technology, USA) antibodies at 4 ℃ overnight. The membranes were washed and incubated with anti-mouse (ab97040) and anti-rabbit (ab7090) HRP secondary antibodies (1:2,000, Abcam), and the protein bands were detected with enhanced chemiluminescence (Bio-Rad).
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10

Protein Expression Analysis in Rheumatoid Arthritis

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RASFs (8 × 105) and serum samples were exposed to RIPA buffer to extract total proteins. Protein concentration was quantified as per the instruction of a bicinchoninic acid assay (BCA) protein assay kit (Pierce Biotechnology, Rockford, IL, USA). Afterward, the protein samples were loaded onto 10% separating gel and then shifted onto a polyvinylidene fluoride membrane (Millipore, Billerica, MA, USA). The membrane was incubated with the primary antibodies against proliferating cell nuclear antigen (PCNA) (ab29; 1:1000; Abcam, Cambridge, MA, USA), Cyclin D1 (ab16663; 1:200; Abcam), Cyclin E1 (ab33911; 1:1000; Abcam), BCL2-associated x protein (Bax) (ab32503; 1:5000; Abcam), B-cell lymphoma-2 (Bcl2) (ab32124; 1:1000; Abcam), IL-1β (ab216995; 1:1000; Abcam), TNF-α (ab183218; 1:1000; Abcam), RSPO1 (ab106556; 1:500; Abcam), and β-actin (ab8226, 1:1000; Abcam). Then, the membrane was incubated with HRP-conjugated secondary antibody (ab205718/ab205719; 1:5000; Abcam), and the protein bands were visualized by electrochemiluminescence. The intensities of protein bands were quantified using Image Lab analysis software (Bio-Rad, Hercules, CA, USA).
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