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24 protocols using gb21301

1

Spinal Cord Tissue Immunohistochemistry

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The wax‐embedded spinal tissue in each group (n = 5) was sectioned into slices at a thickness of 4 μm. After wax removal, hydration and antigen repair, the section was rinsed with phosphate‐buffered saline (PBS, pH = 7.4) three times for 5 minutes each time. Then, the section was subjected to blocking using 10% bovine serum albumin (BSA) for 30 minutes. The primary antibodies anti‐NeuN (MAB377; Millipore) and anti‐myelin basic protein (anti‐MBP, ab62631, Abcam) were added and incubated overnight at 4°C. After washing with PBS three times for 5 minutes each time, the secondary antibody (goat anti‐mouse, GB21301; goat anti‐mouse, GB25301; Servicebio) was incubated at room temperature for 50 minutes. Then, DAPI staining, antiquenching and sealing were conducted. The fluorescence images were scanned with a Pannoramic 250 (Pannoramic MIDI; 3D HISTECH); then, the images were viewed with CaseViewer (3D HISTECH) software. Photoshop CC (Adobe) and Image‐Pro Plus 6.0 software (Media Cybernetics) were used to process and analyse the images. The integrated optical density (IOD) of MBP in the whole cross‐sectional image was quantified, the NeuN‐positive cells in the anterior horns of the spinal cord were manually counted, and the counts were averaged. Both tests were quantified in a double‐blind manner.
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2

Immunofluorescence Staining of Lung Tissue

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After dehydration and a blocking treatment, the lung tissue sections were incubated overnight at 4 °C with primary antibodies (TPSAB1 (1:200, 13343-1-AP, Proteintech, Wuhan, China), PAR2 (1:200, ab180953, Abcam, London, UK), GM-CSF (1:200, 17762-1-AP, Proteintech, Wuhan, China), IL-33 (1:200, 66235-1-Ig, Proteintech, Wuhan, China), and TSLP (1:200, ab47943, Abcam, London, UK)). The next day, the sections were treated with a corresponding fluorescently-labeled secondary antibody (Cy3 conjugated goat anti-rabbit IgG (1:300, GB21303, Servicebio, Wuhan, China) or Cy3 conjugated goat anti-mouse IgG (1:300, GB21301, Servicebio)) for 1 h at 25 °C, and were subsequently mounted using a VECTASHIELD mounting medium containing DAPI. Fluorescence images were acquired using the Nikon Eclipse C1 and Nikon DS-U3 systems (Nikon, Tokyo, Japan).
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3

Immunofluorescence Staining of AQP5, NOS2, and ET-1

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Immunofluorescence staining was accomplished by deparaffinizing the above paraffin sections, repairing the antigen, and blocking them by drip for 30 minutes. Phosphate buffer solution (PBS) was then diluted the primary antibody before it was incubated at 4°C overnight. Fluorescein-labeled secondary antibodies were then incubated for 50 minutes at room temperature after washing. The sections were incubated for 10 minutes at room temperature in the darkness before the nuclei were counterstained with DAPI. After adding the autofluorescence quench agent for 5 minutes, the slides were then rinsed with running water for 10 minutes. The mounted slides were observed and analyzed using a fluorescence microscope (U-HGLGPS, OLYMPUS, Japan). Aquaporin 5 (AQP5) (NBP2-92926, NOVUS), Inducible nitric oxide synthase (NOS2) (bs-2072R, Bioss), and Endothelin-1 (ET-1) (NB300-526, NOVUS) were labeled by CY3 (Servicebio, GB21303; Servicebio, GB21301) as red fluorescence.
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4

Immunofluorescent Labeling of Pancreatic Hormones

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After dewaxing the pancreatic sections, antigens were retrieved by citric acid buffer (pH 6.0) and incubated with 1% sheep serum (catalog No. WGAR1009-5, Servicebio, Wuhan, P.R.C) for 30 min. Then the slices were incubated with primary antibodies: Anti-insulin Mouse pAb (1:200; catalog No. GB12334, Servicebio, Wuhan, P.R.C), Anti-glucagon Rabbit pAb (1:200; catalog No. GB11097, Servicebio, Wuhan, P.R.C) at 4°C overnight and labeled with secondary antigens (CY3-labeled sheep anti-mouse IgG, FITC-labeled sheep anti-rabbit IgG, catalog No. GB21301 and GB22303, Servicebio, Wuhan, P.R.C). Nuclei were marked with 4’6-diamidino-2-phenylindole (DAPI, catalog No. G1012-10ML, Servicebio, Wuhan, P.R.C). Staining was quantified with six to ten randomly chosen fields on each slide and the data were analyzed using Image-Pro Plus software (Media Cybernetics, Rockville, MD, USA) blindly.
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5

Aquaporin-4 and Basement Membrane Visualization

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After deparaffinization and hydration, antigen recovery was performed with ethylene diamine tetraacetic acid antigen retrieval buffer (pH 8.0). Coronal sections were maintained at a subboiling temperature for 8 min to facilitate staining with an AQP4 antibody. Sections were then blocked in phosphate-buffered saline (PBS) with 3% bovine serum albumin (BSA) for 30 min, and stained sequentially with primary mouse antibody AQP4 (1:500, #GB12529, Servicebio) and Alexa Fluor 594 antimouse (1:300, #GB21301, Servicebio), together with the fluorescein isothiocyanate (FITC) conjugate Bandeiraea simplicifolia Isolectin B4 (BSI-B4, 1:50, #L-2895, Sigma). The brain sections were then covered with an antifade medium containing 4′,6-diamidino-2-phenylindole (DAPI, #D21490, Invitrogen). For this experimental step, IB4-FITC (2 mg dissolved in 2 ml saline, 0.05 mg per animal) was intravenously administered to the animals to identify the basement membrane. This was an important step as IB4 binds to a-D-galactose residues in the basement membrane secreted by endothelial cells (24 (link)). In each group, the circulation period of IB4-FITC was ensured for 180 min before sacrifice.
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6

Immunofluorescence Analysis of NP and DNMT1 in A549 Cells

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A549 cells were treated with 40 μM LY294002 or CA07 (MOI = 5) for 48 h. Cells were fixed with 4% pre-cooled formaldehyde for 15 min after removing the media, then followed by washing with PBS once and permeabilized with 0.1% Triton X-100 for 30 min. Next, the cells were blocked in PBS containing 5% bovine serum albumin (BSA) for 1 h at room temperature. After blocking, cells were incubated with anti-NP rabbit polyclonal (GTX125989, GeneTex) and anti-DNMT1 rabbit polyclonal (GTX116011, GeneTex) at 4 °C overnight. Cells were then washed with PBS and incubated with Alexa Fluoro 488-conjugated anti-rabbit antibody (ZF-0511, ZSJQ-BIO) and CY3 (GB21301, Servicebio) for 1 h at room temperature. Lastly, cells were stained by DAPI staining solution for 5 min. The images were captured using an Olympus Fluorescence IX73 Microscope.
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7

Immunofluorescence Staining of ACE2, SP1, and HNF4α

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Cells were fixed with 4% paraformaldehyde (PFA) for 10 min at room temperature. Paraformaldehyde-fixed, paraffin-embedded tissue samples was cut into 4 μm slices and adhered to frosted glass slides. After washing with PBS and treating with PBS containing 0.1% Triton X-100 for 15 min, the sections and cells were permeabilized and blocked with 0.1% Tween-20 in PBS (PBST) containing 5% FBS for 90 min at room temperature. The cells were immunostained with anti-ACE2 (ab15348, 1:500, Abcam), anti-SP1 (T453) (ab59257, 1:500, Abcam), or anti-HNF4α antibodies (3113, 1:1 000, Cell Signaling Technology) overnight at 4 °C. The tissue sections were immunostained with anti-ACE2 (GB11267, 1:200, Servicebio, Wuhan, China) or anti-SARS-CoV-2-N antibodies (40143-MM05, 1:500, SinoBiological, Beijing, China) overnight at 4 °C. After washing three times with 0.1% Tween-20 in PBS (PBST), the cells were incubated with Alexa Fluor 594 anti-rabbit IgG (H+L) (A-21207, 1:200, ThermoFisher Scientific), Cy3 conjugated goat anti-mouse IgG (H+L) (GB21301, 1:300, Servicebio), or Alexa Fluor 488-conjugated goat anti-rabbit IgG (H+L) (GB25303, 1:500, Servicebio) at room temperature for 1 hr. After staining with primary antibodies, nuclei were counterstained with 4’,6-diamidino-2-phenylindole (DAPI). Images were acquired using a Zeiss Axioskop 2 plus fluorescence microscope (Carl Zeiss, Jena, Germany).
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8

Immunohistochemical Analysis of MDA Expression

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The xenograft tumors of the mouse model were fixed with formalin and embedded with paraffin. 4-μm sections were obtained from the paraffin-embedded tissues. After warmed at 55 °C for 30 min, the sections were dewaxed and rehydrated in xylene and ethanol, respectively. Then, the sections were boiled in sodium citrate-hydrochloric acid buffer solution for 10 min and blocked with 1% goat serum for 20 min at room temperature. The sections were incubated with mouse monoclonal antibody to MDA antibody (ab243066, Abcam, Cambridge, UK) at a dilution of 1:100 overnight at 4 °C, followed by incubation with a CY3-labeled goat anti-mouse IgG secondary antibody (GB21301, Servicebio) for 30 min at 37 °C. The cell nucleus was stained with DAPI.
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9

Immunohistochemical and Immunofluorescent Analysis of LDHA in Oral Mucosal Tissues

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The formalin‐fixed, paraffin‐embedded oral mucosal tissues were prepared, sectioned at 4 micrometres and analysed for the presence of LDHA antigen on the basis of standard immunohistochemistry protocols. Tissue sections were incubated overnight at 4℃ with LDHA rabbit polyclonal antibody (1:100, Catalog # 19987–1‐AP, Proteintech, Wuhan, China), followed by HRP polymer conjugated anti‐rabbit secondary antibody for 1 h at 37°C. Next, diaminobenzidine solution was used to detect the signal, and haematoxylin was used to counterstain the nucleus. Images were acquired using OLYMPUSCH30 microscope (BHS‐313, Olympus, Japan) at 200× and 400×. The mean optical density (MOD) was used to analyse the positive staining via Image‐Pro Plus 6.0 version (IPP, Media Cybernetics).
The sections for immunofluorescence staining were incubated with CD3 mouse monoclonal antibody (1: 100, Catalog # 60181–1‐Ig, Proteintech) and LDHA rabbit polyclonal antibody (1: 100, Proteintech) at 4°C overnight. Then, signals were observed using Cy3‐conjugated (1: 200, Catalog # GB21301, Servicebio, Wuhan, China) and Alexa Fluor® 488‐conjugated (1: 200, Catalog # GB25303, Servicebio) secondary antibodies. Nuclei were stained with DAPI. The slides were scanned under Pannoramic MIDI, and images were captured with CaseViewer (3DHISTECH). The fluorescence contrast parameters were described in detail in Appendix S3.
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10

Quantifying Tumor-Infiltrating T Cells

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Tumor cells were seeded at 3×104 cells per well in glass slides and cultured for 12 hours. Then activated T cells were added to the culture in the absence or presence of F7AK3 (1 µg/mL) for 30 min. Afterwards, cells were washed twice with PBS and fixed with 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and blocked with 5% BSA. Cells were incubated with anti-TROP2 (Abcam, ab214488) and anti-CD3 (Servicebio, GB13440) overnight at 4°C. Secondary fluorescent antibodies conjugated with FITC and Cy3 (Servicebio, GB22303 and GB21301) were added for 1 hour and 4',6-diamidino-2-phenylindole (DAPI) (Servicebio, G1012) was used for nuclear staining. The percentages of CD3+ T cells in tumor tissues were quantified manually as the percentage of green labeled cells (CD3+ T cells) to all cells (DAPI). Images were obtained with a confocal microscope (Olympus) under a 60×oil objective.
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