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N octyl β d glucoside

Manufactured by Anatrace
Sourced in United States

N-octyl-β-D-glucoside is a non-ionic detergent commonly used in the solubilization and purification of membrane proteins. It is a naturally-derived sugar-based detergent with a critical micelle concentration (CMC) of approximately 20-25 mM in water at 25°C.

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5 protocols using n octyl β d glucoside

1

Reconstitution of Membrane Proteins in Liposomes

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Soy polar lipid extract (composition (w/w), 45.7% phosphatidylcholine, 22.1% phosphatidylethanolamine, 18.4% phosphatidylinositol, 6.9% phosphatidic acid and 6.9% other soy lipids) in chloroform (Avanti) was dried and resuspended in reconstitution buffer (30 mM HEPES pH 7.4, 140 mM NaCl and 5 mM MgCl2). Liposomes were homogenized by extruding through 0.4 µm pore size polycarbonate membranes (Millipore) and n-octyl-β-d-glucoside (Anatrace) was added to a final concentration of 1% (v/v). Liposome suspension was sonicated in water bath three times for 1 min, with incubation on ice for 1 min in between each sonication. Purified protein was added to liposomes to a calculated lipid:protein ratio of five. The detergent n-octyl-β-d-glucoside was removed by incubating with 400 mg ml−1 Bio Beads (Bio-Rad) overnight at 4 °C using a rotary shaker. Proteoliposomes (5 mg ml−1) were flash frozen in liquid nitrogen and stored at −80 °C.
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2

Grid Preparation for Cryo-EM Sample Vitrification

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C-flat holey carbon grids (CF-1.2/1.3–4Au, Protochips, Morrisville, NC) were glow-discharged for 20 sec before the application of 3.5 μL of the samples. OG, (n-Octyl-β-D-Glucoside, Anatrace, Maumee, OH), was added to the samples to a final 0.1% (w/v). Using a Vitrobot Mark IV (Thermo Fisher Scientific Electron Microscopy, Hillsboro, OR), grids were blotted and plunge- froze into liquid ethane with 100% chamber humidity at 22°C.
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3

Membrane Protein Solubilization Optimization

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The detergent n-dodecyl-β-D-maltoside (DDM) was purchased from Inalco Pharmaceuticals (San Luis Obispo, CA), whereas all other detergents used were from Anatrace (Maumee, OH): n-undecyl-β-D-maltopyranoside (UDM), n-decyl-β-D-maltopyranoside (DM), n-octyl-β-D-glucoside (OG), n-nonyl-β-D-glucoside (NG), 3[(3-cholamidopropyl) dimethylammonio] propanesulfonic acid (CHAPS), n-dodecyl-N,N-dimethyl-3-ammonio-1-propanesulfonate (AZ), 2,2-dioctylpropane-1,3-bis-β-D-maltopyranoside (DMNG), and n-dodecylphosphocholine (FS-12). For solubilization analysis, 10 μL of detergent mixture (2X of desired concentration (w/v)) dissolved in 500 mM NaCl, 50 mM Tris/HCl, pH 8, with 10% glycerol, was combined with 10 μl of membrane vesicles (4 mg/ml) diluted in the same buffer. The mixture was incubated at 4°C for 2 h with gentle rotation, followed by centrifugation at 125,000 g for 45 min to separate solubilized from unsolubilized material. Samples were subjected to SDS-PAGE and Western blot analysis as described earlier. ImageJ software was used for quantitative analysis.
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4

Membrane Protein Reconstitution Protocol

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Talon superflow resin was purchased from BD Clontech (Palo Alto, CA). Dodecyl-β-D-maltopyranoside (DDM) and n-octyl-β-D-glucoside were from Anatrace (Maumee, OH), and synthetic phospholipids (POPE and POPG) were from Avanti Polar Lipids, Inc. (Alabaster, AL). All other materials were of reagent grade obtained from commercial sources.
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5

Membrane Protein Solubilization Optimization

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Membranes were diluted with buffer A and mixed with different detergents to a final protein concentration of 2 mg mL−1 and a detergent concentration of 10 × critical micelle concentration (CMC) [5.3% n-Octyl-β-D-glucoside (OG), 2% n-nonyl-β-D-glucoside (NG), 0.47% n-dodecylphosphocholine (Fos-choline-12, FC-12), and 0.087% n-dodecyl-β-D-maltopyranoside (DDM) (Anatrace, Maumee, Ohio, USA)]. The non-solubilized and solubilized proteins were separated (150,000× g, 30 min, 4 °C) and checked through Coomassie and Western-Blot.
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