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7 protocols using fitc ki 67

1

Isolation and Phenotyping of Mucosal Mononuclear Cells

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Mucosal mononuclear cells (MMC) were isolated from rectal biopsies using a combination of mechanical and enzyme digestion [26 ]. Flow cytometric analysis was performed on a BD™ LSRFortessa cytometer (BD Biosciences, San Jose, CA). All antibodies were purchased from BD Biosciences, San Jose, CA (PerCP-CD45, Clone 2D1; Pacific Blue-CD3, Clone UCHT1; Alexa Fluor 700-CD4, Clone RPA-T4; APC-H7-CD8, Clone SK1; PE-Cy7-CD69, Clone FN50; FITC-HLA-DR, Clone L243; PE-CF594-CD38, Clone HIT2; FITC-Ki-67; APC-CD184 (CXCR4), Clone 12G5; and PE-CD195 (CCR5), Clone 2D7). Cells were stained with LIVE/DEAD® Fixable Aqua stain fluorescence (Life Technologies, Eugene, OR) to define viable cells.
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2

Multiparametric Immunophenotyping of Human PBMCs

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Human PBMCs were stained with BV421-CD4 (BioLegend, OKT4, CAT# 304222, RRID: AB_2562134), PE/Cy7-CD25 (BioLegend, M-A251, CAT# 356108, RRID: AB_2561975), PE-CD45RA (BioLegend, HI100, CAT# 304108, RRID: AB_314412), PerCP/Cy5.5-CD45RO (BioLegend, UCHL1, CAT# 304222, RRID: AB_2174124), BUV395-CD3 (BD Biosciences, UCHT1, CAT# 563548, RRID: AB_2744387), APC-FOXP3 (Thermo Scientific, PCH101, CAT# 17-4776-42, RRID: AB_1603280), FITC-Ki67 (BD, B56, CAT# 556026, RRID: AB_396302). T cells activation with phorbol-12-myristate 13-acetate/ionomycin (PMA/iono) was performed according to the manufacturer’s protocol (BioLegend, CAT# 423301).
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3

Assessing Cell Viability and Proliferation

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Cells were seeded at 0.8 × 106 cells/ml for 24 h. Next, cells were treated with 1 μM KPT-185 (Selleck Chemicals, Munich, Germany) or 20 nM LMB (Enzo Life Sciences, Brussels, Belgium). Cell viability and proliferation were assessed by (i) Trypan Blue exclusion dye assay, (ii) the cell proliferation reagent WST-1 (Roche Life Sciences) according to the manufacturer’s instructions, and (iii) flow cytometry using FITC-Ki-67 (BD Biosciences, CA, USA). The detailed protocols are described in the Online Supplementary Methods.
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4

LDL-induced HUVEC cell death and proliferation

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Confluent HUVECs were either treated or not treated with native LDL or Mox-LDL at a final concentration of 100 μg/mL for 24 hours. Cell death was detected using the LIVE/DEAD Fixable Red Dead Cell Stain Kit (Molecular Probes; Cat. number L-23102) following manufacturer's instructions. HUVECs were harvested and stained with the near-IR Dead Cell Stain which is excited at a 633/635 nm wavelengths. For proliferation analysis, BD Pharmingen Ki67 kit was used and the assay was also performed according to manufacturer's instructions. In brief, after staining with the Red Dead Cell Stain, cells were fixed, permeabilized, and then stained with FITC-Ki67 (BD Pharmingen, San Diego, CA, USA; Cat. number 612472) for 20 min at 4°C. Cells were then analyzed using BD FACSCanto II flow cytometry, and data were analyzed using FlowJO (Tree Star, inc.©). The experiments were performed in duplicate and the percentages of proliferating and dead cells were averaged between the duplicates.
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5

Cell Cycle and Apoptosis Analysis

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Cell cycle and apoptosis analyses were performed on a BD FACS Canto instrument using the following antibodies: fluorescein isothiocyanate (FITC) Ki-67 (BD Biosciences) and FITC Annexin V (BD Biosciences). Analyses of cell cycle and cell survival were performed as described in Piryani et al.19 (link)
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6

Sorting and Staining of HSCs

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Sorted HSCs were fixed and permeabilized using Cytofix/Cytoperm plus kit (BD), according to the manufacturer's instruction. Fixed cells were then stained overnight with FITC Ki67 (BD) at 4 °C, and 10 min by Hoechst 33342 (Invitrogen).
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7

Assessing Cell Viability and Proliferation

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Cells were seeded at 0.8x10 6 cells/ml for 24 h. Next, cells were treated with 1 µM KPT-185 (Selleck Chemicals, Munich, Germany) or 20 nM LMB (Enzo Life Sciences, Brussels, Belgium). Cell viability and proliferation was assessed by (i) Trypan Blue exclusion dye assay, (ii) the cell proliferation reagent WST-1 (Roche Life Sciences) according to the manufacturer's instructions, and (iii) flow cytometry using FITC-Ki-67 (BD Biosciences, CA, USA). The detailed protocols are described in the Online Supplementary Methods.
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