The largest database of trusted experimental protocols

33 protocols using acetic acid

1

Reagents and Materials for Biological Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Brain heart infusion (BHI) broth, malt extract agar, and Ringer’s solution were obtained from LABM (Heywood, UK). Ciproxin was obtained from Oxoid Ltd. (Basingstoke, UK) and amphotericin B from Mast Group Ltd. (Merseyside, UK). Dulbecco’s Modified Eagle’s Medium (DMEM), DMEM high glucose, RPMI media, and low melting agarose were purchased from Gibco® (Gaithersburg, MD, USA). Fetal bovine serum (FBS), trypsin, penicillin/streptomycin, trypan blue 0.5%, and phosphate-buffered saline (PBS) were purchased from Biosera (Boussens, France). Dimethyl sulfoxide (DMSO) and propidium iodide were purchased from Biotium (Hayward, CA, USA), while hydrogen peroxide, ABTS, potassium persulfate, ascorbic acid, sulforhodamine B (SRB), Trizma base, and etoposide were purchased from Sigma-Aldrich (St. Louis, MO, USA). TrichloroAcetic acid (TCA) was obtained from MP Biomedicals (Santa Ana, CA, USA). Acetic acid and ethanol were purchased from Scharlau (Barcelona, Spain) and DPPH from Calbiochem® (Darmstadt, Germany).
+ Open protocol
+ Expand
2

Quantifying Bacterial Biofilm Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To confirm biofilm formation and test its homogeneity, biofilm development was quantified using crystal violet method [34 (link)]. To run this method, the supernatant from each well was discarded, and the biofilm was carefully washed with 200 µL sterile 1X phosphate buffered saline (1X PBS, Sigma-Aldrich, Saint Louis, MO, USA). Wells were dried for 30 min at 37 °C. Then, 50 µL of crystal violet (1% w/v, Sigma-Aldrich, Saint Louis, MO, USA) were added to each well and incubated for 15 min. Wells were washed twice with sterile 1X PBS to remove unabsorbed crystal violet solution. Then, wells were destained with 200 µL of acetic acid (33% v/v, Scharlab, Barcelona, Spain) for 15 min and each well was shaken with the pipette. After that, 150 µL of this solution were transferred to a new 96-well plate and absorbance was read at 630 nm using a microtiter plate reader (EpochTM, BioTek Instruments, Winooski, VT, USA). Control wells were included in all experiments to eliminate any background signal (free-inoculum control).
+ Open protocol
+ Expand
3

Extraction and Analysis of Bioactive Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
HPLC grade methanol, acetone, and methyl tert-butyl ether were acquired from Fisher Scientific Scharlau Chemie (Loughborough, UK). Sodium chloride was purchased from POCH S.A. (Sowińskiego, Poland). Ultrapure water was obtained with a Milli-Q system (Millipore Ibérica, Madrid, Spain). Ammonium carbonate, acetonitrile, hexane, ethanol (HPLC grade), magnesium chloride hexahydrate, acetic acid, and ammonium acetate were acquired from Scharlab (Sentmenat, Spain). Butyl hydroxytoluene (BHT) was purchased from Scharlau Chemie S.A. (Barcelona, Spain). Calcium chloride dihydrate was obtained from Merck (Darmstadt, Germany). Sodium hydrogen carbonate and potassium dihydrogen phosphate were acquired from VWR (Llinars del Vallès, Spain). Potassium chloride was obtained from Panreac (Castellar del Vallès, Spain). Digestive enzymes (porcine pepsin, porcine bile extract, porcine pancreatin, and porcine lipase) were acquired from Sigma-Aldrich (Darmstadt, Germany).
Caffeic acid, ferulic acid, and p-coumaric acid commercial patterns were obtained from Sigma-Aldrich (St. Louis, MO, USA). B-carotene standard was acquired from Carote-Nature (Ostermundigen, Switzerland), and α-carotene was acquired from Supelco-Merck (Darmstadt, Germany).
+ Open protocol
+ Expand
4

Milk Extraction for GC-μECD Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Milk samples were thoroughly mixed, followed by transferring 5 mL of homogenate in 50 mL PFTE tube containing a mixture of 10 mL deionized water and 10 mL acidified acetonitrile with acetic acid (Scharlau, Barcelona, Spain). The mixture was shaken manually, then added 4.0 g of anhydrous Mg sulfate, 1.0 g of Na Cl, 1 g of Na citrate, and 0.5 g Na hydrogen citrate sesquihydrate (Merck, Darmstadt, Germany). Finally, the content was mixed by shaking for 1 min, followed by centrifugation at 1792 × g for 3 min. Subsequently, 1 mL of the supernatant clear solution was transferred into 15 mL of polyethylene tube containing 25 mg amine sorbent (Supelco, Bellefonte, USA) and 150 mg anhydrous Mg sulfate (Merck). Then the tube was shaken vigorously manually for 1 min then centrifuged (Sigma, Darmstadt, Germany) for 1 min. at 2800 ×g. Finally, 0.5 mL of supernatant was taken into a glass vial, evaporated to dryness, and re-dissolved in 0.5 mL n-hexane for gas chromatograph-microelectron capture detector (GC-μECD) analysis (Agilent Technologies, Santa Clara, CA, USA).
+ Open protocol
+ Expand
5

Analytical Characterization of Olive and Whey Biomolecules

Check if the same lab product or an alternative is used in the 5 most similar protocols
All reagents were of analytical grade. Water was obtained with a Milli-Q system from Millipore (Bedford, MA, USA). Acetone, hexane, hydrochloric acid (HCl), acetic acid (AA), acetonitrile (ACN), and methanol (MeOH) were from Scharlau (Barcelona, Spain). Tris(hydroxymethyl)aminomethane (Tris), sodium dodecyl sulfate (SDS), DL-dithiothreitol (DTT), sodium chloride (NaCl), urea, sodium hydroxide (NaOH), trifluoroacetic acid (TFA), β-mercaptoethanol (β-M), bovine serum albumin (BSA), lysozyme from chicken eggs (LYS), myoglobin from equine heart (MYO), and concanavalin (CONC) were from Merck (Darmstadt, Germany). Laemmli buffer, Mini-Protean precast gels, Tris/glycine/SDS running buffer, Bio-Safe Coomassie stain, and Bradford reagent (Coomassie Blue G-250) were acquired at Bio-Rad (Hercules, CA, USA).
Raw olives of Picual variety were kindly donated by the World Olive Germplasm Bank of IFAPA (Córdoba, Spain) and cheese whey was kindly donated by a cheese factory.
+ Open protocol
+ Expand
6

Antiproliferative Effects of Lactobacillus AGR 4

Check if the same lab product or an alternative is used in the 5 most similar protocols
The sulforhodamine B (SRB) cytotoxicity assay was employed to investigate the antiproliferative potential of Lactobacillus AGR 4 against HT-29 and A375 cells. Cells were seeded in 96-well plates at a density of 7000 cells per well and were incubated overnight. The next day, the wells were washed with PBS and the bacteria were added in the wells at a density of 106 or 107 CFU/mL. After 24 or 48 h incubation the cells were washed with PBS, fixed by 50% (w/v) cold trichloroacetic acid (TCA) (Fluka, Buchs, Switzerland) and stained with 0.4% (w/v) SRB (Sigma-Aldrich) diluted in 1% (v/v) acetic acid (Scharlau, Barcelona, Spain). Removal of the excessive dye was achieved by washing with 1% (v/v) acetic acid. The bound dye was dissolved in 10 mM Tris base (Sigma-Aldrich). For the measurement of the absorbance at 570 nm a multiplate reader was used (Tecan, Männedorf, Switzerland). For the calculation of the cellular survival the following formula: ((sample OD570-media blank OD570)/(mean control OD570-media blank OD570)) × 100 was applied.
+ Open protocol
+ Expand
7

Cancer Cell Viability Assay Using SRB

Check if the same lab product or an alternative is used in the 5 most similar protocols
The viability of cancer cells after treatment with the juice was determined using the Sulforhodamine B (SRB) assay, as previously described with few modifications [14 (link)]. SRB is a dye that binds to basic amino acids of cellular proteins and, then, the number of viable cells is estimated with colorimetric evaluation [15 (link)]. Cells were plated in 96-well plates and treated with different concentrations of the juice (0.0007–1% v/v). Then, the cells were fixed with the addition of 25 μL of 50% (w/v) cold trichloroacetic acid (TCA) (Applichem, Darmstadt, Germany) to the growth medium and incubation of the plates at 4 °C for 1 h. The cells were washed five times with tap water and then stained with 50 μL of 0.4% (w/v) SRB dye (Sigma-Aldrich, St Louis, MO, USA) in 1% (v/v) acetic acid (Scharlau, Barcelona, Spain) for 30 min at room temperature. Next, the cells were rinsed five times with 1% (v/v) acetic acid to remove the unbound dye. The fixed, stained plates were allowed to air-dry and afterwards the bound dye was solubilized by adding 100 μL of 10 mM Trizma base (Sigma-Aldrich, St Louis, MO, USA) for at least 5 minutes. Absorbance was measured at 570 nm using an ELISA plate reader (Sunrise, Tecan, Männedorf, Switzerland) and the percent cellular survival was calculated using the formula:

+ Open protocol
+ Expand
8

Phenolic Compounds Extraction and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
HPLC grade acetonitrile, 2-propanol, n-hexane, methanol, formic and acetic acid were purchased from Scharlau (Scharlab SL, Spain). Reference standards for the phenolic compounds analysis: Ferulic acid, caffeic acid, coumaric acid, vanillic acid, syringic acid and apigenin-7-O-glucoside were obtained from Extrasynthese (Genay, France), while p-hydroxybenzoic acid, sinapic acid, catechin, and procyanidin B2 were purchased from Sigma Aldrich (Steinheim, Germany). 2,2′-azobis(2,4-dimethylvaleronytril) and 6-hydroxy-2- 5,7,8-tetramethylchroman-2-carboxylic acid used in ORAC assay were obtained from Sigma Aldrich (Steinheim, Germany) and 2,2-diphenyl-1-picrylhydrazyl reagent were purchased from Alfa Aesar (Ward Hill, MA, USA) to DPPH test. All other reagents used were of analytical grade from Scharlau (Scharlab SL, Spain). Deionized water was obtained from a Milli-Q water purification system (Millipore, Bedford, MA, USA).
+ Open protocol
+ Expand
9

Chitosan-based Antioxidant Oil Formulations

Check if the same lab product or an alternative is used in the 5 most similar protocols
Medium molecular weight chitosan with a deacetylation degree of 75–85% (448877) and high molecular weight chitosan with a >75% deacetylation degree (419419) were purchased from Sigma-Aldrich (Burlington, MA, USA)and used as received. Ascorbic acid (AC05150) and acetic acid (AC0344) were purchased from Scharlau (Spain), and Tween® 20 (Polysorbate) (97062-332) was purchased from VWR (Radnor, PA, USA) and used as received. Grape seed essential oil was purchased from Herbavit (Bucharest, Romania), and sea buckthorn essential oil was purchased from Hofigal (Bucharest, Romania) and used as received. Folin–Ciocalteu reagent (F9252), xylene (214736), sodium bicarbonate (S6014), sodium acetate (S8750), 2,2-diphenyl-1-picrylhydrazyl (DPPH) (247642), and potassium chloride (P3911) were purchased from Merck (Darmstadt, Germany).
+ Open protocol
+ Expand
10

Gelatin-Based EGCG Antioxidant Evaluation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Type A gelatin from porcine skin (Gel), with reported gel strength of 175 g Bloom was obtained from Sigma-Aldrich. (Ð)-Epigallocatechin gallate (EGCG), 2,2'-azino-bis(3ethylbenzothiazoline-6-sulfonic acid) diammonium salt (ABTS), buffer solutions of pH 7.4 (phosphate buffered saline system, PBS) and pH 6.1 (2-(Nmorpholino)ethanesulfonic acid hemisodium salt, MES), potassium persulfate (K 2 O 8 S 2 ) and potassium bromide FTIR grade (KBr) were also obtained from Sigma-Aldrich. 96% (v/v) acetic acid (Scharlab) and 96% (v/v) ethanol (Panreac) were used as received.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!