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6 protocols using cd63 antibody

1

Immunofluorescence Analysis of A549 Cells

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A549 and A549/DDP cells were planted in 12-well plates. After culturing for 24 h, the cells were fixed with 4% paraformaldehyde, and after permeabilized with 0.2% Triton X-100 for 10 min, the cells were blocked for 1 h. Afterwards, specific antibodies, such as CD63 antibody (1:100, Abcam), γH2AX antibody (1:100, Abcam) were incubated with cells at 4°C overnight. After incubation with Goat Anti-Rabbit IgG antibody Alexa Fluor 488 (Invitrogen) for 1 h, the cells were photographed with Olympus fluorescence microscope.
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2

Exosome Surface Marker Detection Protocol

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The surface markers (CD9, CD63, TSG101, and Alix) of the isolated exosomes were correspondingly detected by Western blotting as reported previously [53 (link),54 (link)]. The exosomes were lysed using a Mammalian Cell Lysis kit (Sigma) and quantified by a Micro BCA Protein Assay kit (Pierce). Equal amounts of the proteins were electrophoresed in a sodium dodecyl sulphate-polyacrylamide gel (10%–12%) under reducing conditions followed by transfer to polyvinylidene fluoride (PDVF) membranes. The blots were blocked with 5% non-fat dry milk in PBS. Western blots were then probed with antibodies recognizing the CD9 antibody (1:1000, Abcam), CD63 antibody (1:1000, Abcam), TSG101 (1:1000, Abcam), and calnexin (1:1000, Sigma). The secondary antibodies were alkaline phosphatase conjugated to goat anti-mouse (Santa Cruz)/rabbit lgG (1:5000, Jackson ImmunoResearch Labs)). Signals were detected by chemiluminescence and imaged on an FLA-5100 (Fujifilm) digital image scanner.
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3

Quantification of ACE2 and TMPRSS2 Proteins

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Total protein was isolated using radioimmunoprecipitation assay (RIPA) buffer (Thermo Fisher Scientific, Waltham, MA). Equal amounts of protein were separated on 12% sodium dodecyl sulfate polyacrylamide gels and electro-transferred onto nitrocellulose membrane (Bio-Rad) at 100 V for 2.5 h at 4 °C. The membrane was blocked with 5% BSA for 1 h at RT and probed with primary antibodies against ACE2 (1:600, AF933, R & D Systems) and TMPRSS2 (1:1000, sc-515727, Santa Cruz). GAPDH (1:1000, 3683 S, Cell Signaling) was used as internal control. HRP-conjugated rabbit anti-goat (1:2000, 1721034, Bio-Rad) or goat anti-mouse (1: 2000, STAR117, Bio-Rad) were used as secondary antibodies. For immunoblotting of exosomal proteins, rabbit polyclonal CD63 antibody (1:1000, Abcam) and goat-anti-rabbit (1:2000, Cell Signaling) were used. Target proteins were visualized with an enhanced chemiluminescence detection system (GE Healthcare, NJ) using ChemiDocTM MP imaging system and associated software (Bio-Rad, Hercules, CA).
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4

Antibodies for SARS-CoV-2 Spike Protein Analysis

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The anti‐hACE2 Alexa Fluor 488 antibody used for flow cytometry evaluation of ACE2 expression was obtained from R&D Systems (Catalog no. FAB 9332G). The rabbit‐anti‐SARS‐CoV‐2 spike neutralizing antibody was obtained from Sino Biological (Catalog no. 40592‐R001). The normal rabbit IgG isotype control Ab was obtained from R&D Systems (Catalog no. AB‐105‐C). The calnexin antibody for western blot was obtained from Abcam (Catalog no. AB22595). The polyclonal anti‐spike (S2) antibody was obtained from Abcam (Catalog no. AB272504). The CD63 antibody was obtained from Abcam (Catalog no. AB59479).
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5

Comprehensive Antibodies and Reagents Protocol

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Total β-catenin antibody (1:1,000) was purchased from Invitrogen (712700), glyceraldehyde-3-phosphate dehydrogenase antibody (1:1,000) and FAK antibody (1:1,000, 3285) were obtained from Cell Signaling Technologies, anti-ATP6V0a3 antibody (1:500) was obtained from Novus (nbp1–89333, 1:1,000). CD63 antibody was obtained from Abcam.
Antibodies against Pak1 (ab131522), Ras (ab52939), GSK3 (ab93926, 1:4000), and secondary antibodies for immunostaining for cells (ab150120, ab150084, ab150117, ab150081) (1:300) were obtained from Abcam. Antibody against the focal adhesion protein Tes (HPA018123, 1:100) was obtained from Atlas antibodies. Secondary antibodies for immunostaining arrays (A-11001, A-11011 were obtained from Invitrogen). HRP-linked secondary antibodies (7076, 7074 at 1:5000 (Cell Signaling) were used for Western blots and analyzed with an iBright Imaging system. EIPA (A3085), and LiCl (L4408), were obtained from Sigma. Baf (S1413) and PF-00562271 (FAK inhibitor, S2672) were purchased from Selleckchem. TMR- dextran 70 kDa was obtained from ThermoFisher (D1818). PMA (1201) was purchased from TOCRIS.
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6

Exosome Binding to Type I Collagen

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Dose dependent binding of exosomes to type I collagen was analyzed using ELISA. 96-well assay plates were coated with 5 μg of type I collagen per well. The coated plates were incubated for 1 hour at room temperature with increasing volumes of exosomes. The plates were then washed 3 times in PBS, fixed using 4% neutral buffered formalin, permeabilized using PBS containing 0.5% triton x-100, and blocked for 1 hour at room temperature with PBS containing 5% BSA. The wells were then incubated for 1 hour at room temperature with CD63 antibody (Abcam, 1/1000 dilution), washed 3 times with PBS, and incubated for 1 hour with HRP conjugated secondary antibody (1/3000 dilution). All antibody dilutions were performed in PBS containing 5% BSA. Turbo TMB ELISA substrate was used to for the colorimetric assay followed by addition of acid stop solution (1 M sulfuric acid). The absorbance at 495 nm was measured using a Bio-tek ELISA plate reader. The experiment was performed in quadruplicate. The absorbance was normalized to the control wells (no exosome added, but containing type I collagen and treated with both primary and secondary antibodies) and the results were plotted graphically with volume of exosome on the x-axis and normalized absorbance units on the y-axis.
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