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Cy sc001

Manufactured by Cytoskeleton
Sourced in United States

CY-SC001 is a basic high-speed centrifuge designed for general laboratory use. It can achieve centrifugal forces up to 20,000 g and accommodate sample volumes up to 50 mL. The system features a brushless motor and automated rotor recognition for easy setup and operation.

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5 protocols using cy sc001

1

Cytochalasin D Disrupts Actin Dynamics

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Cytochalasin D (Zygosporin A) inhibits G-actin–cofilin interactions by binding to G-actin. Cytochalasin D also inhibits cofilin binding to F-actin and decreases actin polymerization and depolymerization rates in live cells. In the actin polymerization inhibit assay, A549 cells treated with cytochalasin D at a working concentration of 500 nM and then labeled F-Actin and the nuclei with the live cell fluorogenic F-actin-labeling probes SiR-actin (CY-SC001; Cytoskeleton, Inc.; red) and Hoechst 33342 (blue), respectively.
To investigate the functions of F-actin on adhesion and invasion of M. catarrhalis, A549 cells were incubated with different concentrations of cytochalasin D (100 nM, 500 nM, 1 μM, 5 μM, and 10 μM) in 0.2% DMSO for 45 min before infection with M. catarrhalis 73-OR isolate. Control wells contained only 0.2% DMSO. Gentamicin (300 μg/mL) was added to the infected monolayer cells before lysing with 0.25% trypsin and 0.1% saponin to kill any remaining adherent extracellular bacteria. The samples were plated on blood agar plates containing 5% sheep blood to determine the number of adherent or invasion bacteria. All assays were performed in six replicates. At least three independent experiments were performed.
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2

Imaging Actin Dynamics in Live Cells

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Cells were imaged in culture media supplemented with 20 mM HEPES (SH3023701, HyClone) at 37°C, with or without 1 µM SiR-Actin (CY-SC001, Cytoskeleton) or 2 nM Calyculin A (101932-71-2, Cayman), on a Marianas Imaging System (Intelligent Imaging Innovations) consisting of an Axio Observer 7 inverted microscope (Zeiss) attached to a W1 Confocal Spinning Disk (Yokogawa) with Mesa field flattening (Intelligent Imaging Innovations), a Phasor photomanipulation unit (Intelligent Imaging Innovations), a motorized X,Y stage (ASI), and a Prime 95B sCMOS (Photometrics) camera. Illumination was provided by a TTL triggered multifiber laser launch (Intelligent Imaging Innovations) consisting of 405, 488, 561, and 637 lasers, using a 63 × 1.4 NA Plan-Apochromat objective (Zeiss). Temperature and humidity were maintained using a Bold Line full enclosure incubator (Oko Labs). The microscope was controlled using Slidebook 6 Software (Intelligent Imaging Innovations).
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3

Cytoskeletal Imaging of Photoreceptor Protrusions

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A systematic sampling of three images per dish was performed in 8 Nrl:GFP culture preparations after 3 DIV. A total of 24 3D‐reconstructed images were analysed on Imaris 9.0.2 (Bitplane Inc., Zurich, Switzerland). Twelve of them were stained with SiR‐Actin (100 μM) (CY‐SC001, Cytoskeleton Inc. Denver, CO, USA) and 12 with ViaFluor® (50 μM) (70062, Biotium, Fremont, CA, USA). We identified a total of 590 and 278 GFP+ protrusions extending from photoreceptors in actin and tubulin‐stained cultures, respectively. Each protrusion was visually assessed for cytoskeletal marker positivity and labelled accordingly using the Spots module of the software. Then, by visual inspection, protrusions were manually classified as (i) connected, e.g., connecting two cells, or unconnected; (ii) suspended in the media or attached, e.g., in contact with the bottom of the dish at any point along their length; and (iii) distal tip morphology, e.g., straight or terminating with distal swelling (spherule‐like). All data were collected and organized in Microsoft Excel (Office Excel, version 16.35, 2020; Microsoft Corp., Redmond, WA, USA) and analysed in GraphPad Prism version 7.0a sheets (GraphPad Software Inc. La Jolla, CA, USA).
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4

Visualizing Actin Dynamics in HDLECs

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Monolayers of primary HDLECs were grown on 0.1% gelatin-coated glass-bottomed WillCo dishes and labeled with SiR actin (#CY-SC001, Cytoskeleton, Inc.) in EGM-2 medium for 1 h at 37 °C. These were then rinsed and re-incubated in warm L-15 medium either alone or in the presence of Cyto D or Lat B as appropriate. Images of the monolayers were acquired every minute and analyzed using ImageJ. Small rectangles (yellow) were drawn in several F-actin–rich areas, and the average intensity of actin was measured for every minute recorded. The average of the intensities from every recorded rectangle for a single time point was calculated and plotted against time.
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5

Whole Testis Immunofluorescence Staining

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Whole testes from 0-2 day homozygous males were dissected in PBS (pH 7.4) and fixed in 4% paraformaldehyde for 25 minutes. Samples were then washed three times in 0.1% PBS+Triton x-100 (pH 7.4) for 15 minutes each. Hoechst was added at 1:1,000 and incubated overnight at 4°C. Samples were again washed three times in 0.1% PBS+Triton x-100 for 15 minutes each and then incubated in SiR-Actin, a highly specific fluorescent dye for F-actin (1:250, Cytoskeleton, Inc., CY-SC001), for 3 hours at room temperature. Samples were then mounted in Vectashield (Vector Laboratories, H-1000-10) and imaged on a Leica TCS SP5 confocal microscope.
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