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4 protocols using cd154

1

Intracellular Cytokine Profiling of TB Antigen-Specific T Cells

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Intracellular cytokine staining (ICS) was performed as previously described [14 (link)]. PBMC were thawed and rested overnight. Cells (1 x 106 cells/well) were stimulated in 96-well round bottom cell culture plates with Ag85A, Ag85B, and TB10.4 peptide pools (1 μg/peptide/mL), peptides were pre-diluted in R10 medium containing CD107a-Alexa488 (Biolegend, USA), GolgiStop and GolgiPlug (BD Biosciences, USA). Dimethyl sulfoxide (Sigma) was used as a negative control and SEB (0.5 μg/mL) as the positive control. Cells were stimulated for 6–7 hours at 37°C and 5% CO2. After incubation, the cells were washed and stained with viability dye (Invitrogen, USA) before staining with fluorochrome-conjugated antibodies to surface markers CD4 (eBioscience, USA), CD8 (Biolegend), CD14 and CD19 (BD), then permeabilized and stained for CD3 (Beckman Coulter, USA), IFN-γ, IL-2, CD154, TNF-α (all four from BD), IL-17A (Biolegend), and IL-22 (eBioscience). Cells were acquired on BD LSR flow cytometers (BD Biosciences). All sample analysis was performed with FlowJo software (TreeStar Inc., USA).
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2

Phenotypic Characterization of Activated T Cells

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ATCs were analyzed by flow cytometry for the surface markers including CD69, HLA-DR, CD45RO, CD154 and CD137 at day 5 and 12 in addition to CD3, CD4 and CD8. Early activation markers were noted to be highest on day 5 and maximal T cell growth was noted on day 12. Additionally, sterility testing for endotoxin, mycoplasma, gram stain and environmental culture was performed to ensure quality of the cell products for future clinical trials. Antibodies (BD Bioscience) used were anti-human CD3 (Cat. 564,810), CD4 (Cat. 555,346), CD8 (Cat. 560,662), CD69 (Cat. 562,883), HLA-DR (Cat. 564,231), CD45RO (Cat: 561,136), CD154 (Cat. 557,299) and CD137 (Cat. 561,702). Growth of ATCs was also measured along with the activation marker analysis. Maximal growth of T cells was noted to be at day 12 (data not shown).
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3

Multiparameter Analysis of T Cell Responses

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Recombinant-human cytokines and chemokines were from R&D systems. Antibodies for flow cytometry were CCR7, CD3, CD4, CD8, CD25, CD31, CD45RA, CD45RO, CD62L, CD69, CD154, CXCR2, CXCR3, CXCL8, IFN-γ, IL-4, IL-10, IL-17, and IL-22 (BD), CD57, CD122, Foxp3 (eBiosciences/ThermoFischer), KLRG-1 (BioLegend). Antibodies for T cell stimulation were CD3, CD28 (BD or Affymetrix). Small-molecule CXCR1/2 chemical inhibitor Reparixin (RPX) was purchased from MedChem Express.
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4

Neoantigen-reactive CD4+ T-cell Isolation

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Cryopreserved PBMC were thawed and cultured at 2×106 cells/mL in a 24-well plate with anti-CD40 at 500 ng/mL and each of the five neoantigen peptides as well as a control HIV NEF (RYPLTFGWCF) peptide at 1 µg/mL overnight at 37°C. After 16 hours, cells were stained for with LIVE/DEAD Fixable Violet Dead Cell Stain (Invitrogen), followed by lineage markers CD14 (clone M5E2, Biolegend), CD19 (clone HIB19, Biolegend), CD4 (clone SK3, eBioscience), CD8 (clone 3B5, Invitrogen) and activation-induced markers CD69 (clone L78, BD Biosciences), CD137 (clone 4-1BB, Biolegend) and CD154 (clone TRAP1, BD Bioscience). Single neoantigen-reactive CD4 cells were sorted into RNAlater (Thermo Fisher) based on coexpression of CD69, CD137 and CD154 on a BD FACSAria II (BD Biosciences).
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