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2 protocols using westar supernova ecl substrate

1

Western Blot Analysis of Cellular Proteins

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Cells were lysed in SDS sample buffer (62.5 mM Tris–HCl pH 6.8, 2% sodium dodecyl sulfate) supplemented with protease, phosphatase and proteasome inhibitors, pre-heated at 95 °C40 (link). Thereafter, samples were sonicated and protein amount dosed with Pierce BCA protein Assay Kit (Thermo Fisher Scientific). Sixty µg of protein extracts were then separated on NuPage 4–12% Bis–Tris Gels (Thermo Fisher Scientific) and transferred with iBlot System (Thermo Fisher Scientific). Membranes were incubated with blocking buffer (5% nonfat dry milk in TBS-T solution) for 1 h at room temperature and probed overnight at 4 °C with appropriate primary antibodies diluted 1:1000 in blocking buffer: antiFAN83B (Atlas Antiboides), anti-vimentin and anti-SDHA (Abcam), anti-p-ERK1/2, anti-ERK1/2, anti-P-AKT and anti-AKT (Cell Signalling), as previously described40 (link). After washing, membranes were incubated for 1 h at room temperature in the presence of the appropriated HRP-conjugated secondary antibody (Merck Millipore, Burlington, Massachusetts, USA) diluted to 1:5000 in blocking buffer. Detection was performed utilizing Westar Supernova ECL Substrate (Cyanagen, Bologna, Italy) and images acquired with c400 camera (Azure Biosystems, Sierra Ct, Dublin, USA). Band intensity was quantified with FIJI software41 (link). Full-length blot images are shown in Supplementary Figs. 48.
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2

Protein Extraction and Analysis of 3D Spheres

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Tissue lysates were prepared in Laemmli buffer as previously reported [36] , while adherent cells were lysed in ice-cold RIPA buffer with protease and phosphatase inhibitors (Roche) as previously described [37] . Threedimensional spheres were collected and lysed directly by resuspension in ice-cold RIPA, sonicated, and protein amount was dosed with the Pierce BCA protein Assay Kit (Thermo Fisher Scientific). Protein extracts were separated on NuPage 10% Bis-Tris Gels (Thermo Fisher Scientific) and transferred with iBlot Dry Blotting System (Thermo Fisher Scientific). The primary and secondary antibodies used are described in Additional file 3, Table S1. The antibodies used for EpCAM recognition are Anti-EpCAM antibody (E144) directed against an epitope localized in the ICD (EpICD), able to recognize both full length and intracellular cleaved fragments, and EpCAM/TROP-1 Antibody (AF960) that recognizes the full length form but not the ICD (EpEX). A chemiluminescence-based immunodetection was performed with ECL Star Detection (Euroclone) or with Westar Supernova ECL Substrate (Cyanagen) and images were acquired with c400 camera (Azure Biosystems). Band intensity was quantified with FIJI software.
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