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2 protocols using rabbit anti human γ h2ax

1

Quantification of DNA Damage in Zebrafish Embryos

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Laid embryos were collected as mentioned above. The stage of embryos was staged as described42 (link) and doubly checked by WT or WT-like control embryos (the siblings) that were collected in the same time windows. Embryos were dechorionated and sorted into different dishes of mibnn2002 homozygotes and WT siblings at 14 hpf. WT and mibnn2002 homozygotes that did not exposed to UV were moved to room temperate for 15 min. At the same time, the WT-UV control was placed in laminar flow hood with UV on for 15 min. Afterwards, all dishes were moved to 28.5 °C incubator for 1 hour before collected. Collected embryos were dehydrated by −20 °C methanol/acetone (1:1) and stored at −20 °C. Embryos were then sorted into 10 embryos/vial and washed by 1% Triton/PBS several times on shaker. After overnight blocking, embryos were washed by 2% BSA/1% Triton/PBS at 4 °C on shaker, and 1:1000 rabbit anti-human γ-H2AX (Cell signaling, #9718) in 2% BSA/1% Triton/PBS was used for overnight reaction. After intensive wash, 1:1000 goat anti-rabbit Alexa-488 antibody (Molecular probe) in 2% BSA/1% Triton/PBS was used for overnight reaction. After intensive wash, embryos were fixed by 4% paraformaldehyde. Embryos were further deyolked and flat-mounted in 75% glycerol to avoid strong background fluorescence from yolk. Images were taken by Zeiss Axiovision Imager A1.
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2

Multifaceted Immunofluorescence Assay for Cellular Stress Response

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PC-3 cells were cultured in the cell culture chamber. The cells were fixed in 4% paraformaldehyde for 15 min, permeabilized using 0.2% triton X-100 for 10 min, followed by staining with rabbit anti-human γH2AX, rabbit anti-human 53BP1, mouse anti-human phospho-histone H3, rabbit anti-human phospho-p65 (Cell signal technology) and mouse anti-human PD-L1 antibody (Abcam) or normal control IgG 6–8 hours at 4°C. Then, Alexa Flour 488-conjugated goat anti-rabbit IgG and Alexa Flour 594-conjugated goat anti-mouse IgG were added and incubated for 1 hour at 37°C. The nucleus was stained with 4'6-diamidino-2-phenylindole and mounted with ProLong Gold Antifade Reagent (Life Technologies). The images were analyzed using a Zeiss LSM 880 Confocal Imaging System (Zeiss, Jena, Germany).31 (link)
Paraffin-embedded tissues were sectioned and subjected to immunostaining using primary antibodies such as anti-PD-L1, anti-CD45, anti-phospho-ATM, anti-phospho-p65, anti-CD3 and anti-interferon-γ (IFNγ) (Abcam). The isotype-matched primary antibodies served as the controls. Antibody binding was visualized using fluorescence-labeled secondary antibodies under a Zeiss LSM 880 Confocal Imaging System.
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