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6 protocols using fitc lineage

1

Isolation and Analysis of Tumor-Infiltrating Cells

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Tumor tissues were minced and incubated in digestion solution containing 0.5 mg/ml collagenase V, 0.2 mg/ml hyaluronidase and 0.015 mg/ml DNase I (Sigma, St. Louis, USA) in a 37 °C water bath for 1 h.
The samples were then ltered through a 70 µm strainer before staining with uorescence antibodies. Mouse Percy5-CD45, FITC-lineage, PE-CD90.2, and APC-KLRG1 (Biolegend) were used to analyze the percentage of ILC2s in the mouse tumor tissue and human Percy5-CD45, FITC-lineage, PE-CRTH2, and APC-CD127 (Biolegend) were used to analyze the percentage of ILC2s in the human tumor tissue. Mouse CD8 cells were stained with Percy5-CD45, FITC-CD3, and PE-CD8 (Biolegend). For analyzing the percentage of MDSCs, FITC-CD11b and APC-Gr-1 (Biolegend) were used. All surface stained samples were kept at 4 °C for 30 min.
For intracellular staining of IL-9, tumor tissue single-cell suspensions were rst stimulated with 50 ng/mL phorbol myristate acetate (PMA), 1 µg/mL ionomycin, and 2 µg/mL monensin (eBioscience, San Diego, USA) for 6 h. Samples were xed, permeabilized, and stained with IL-9 antibody on a shaker at 4 °C for 45 min.
The apoptosis kit FITC-Annexin V and APC-7-AAD (Multisciences, Hangzhou, China) was used following the manufacturer's protocols to analyze the apoptosis of CT26 cells.
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2

Characterization of Tumor-Infiltrating Immune Cells

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Tumor tissues were minced and incubated in digestion solution containing 0.5 mg/ml collagenase V, 0.2 mg/ml hyaluronidase and 0.015 mg/ml DNase I (Sigma, St. Louis, USA) in a 37 °C water bath for 1 h. The samples were then filtered through a 70 µm strainer before staining with fluorescence antibodies. Mouse Percy5-CD45, FITC-lineage, PE-CD90.2, and APC-KLRG1 (Biolegend) were used to analyze the percentage of ILC2s in the mouse tumor tissue and human Percy5-CD45, FITC-lineage, PE-CRTH2, and APC-CD127 (Biolegend) were used to analyze the percentage of ILC2s in the human tumor tissue. Mouse CD8 cells were stained with Percy5-CD45, FITC-CD3, and PE-CD8 (Biolegend). For analyzing the percentage of MDSCs, FITC-CD11b and APC-Gr-1 (Biolegend) were used. All surface stained samples were kept at 4 °C for 30 min.
For intracellular staining of IL-9, tumor tissue single-cell suspensions were first stimulated with 50 ng/mL phorbol myristate acetate (PMA), 1 µg/mL ionomycin, and 2 µg/mL monensin (eBioscience, San Diego, USA) for 6 h. Samples were fixed, permeabilized, and stained with IL-9 antibody on a shaker at 4 °C for 45 min.
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3

Multicolor Flow Cytometry Panel for Murine HSCs

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Cells were Fc blocked in 1:50 TruStain FcX PLUS (BioLegend, catalog no. 156604) in 2% FBS/PBS for 10 min, followed by a stain of at least 30 min of 1:200 CD11b-FITC (Thermo Fisher Scientific, catalog no. 11-0112-82), 1:400 CD117-PE (Thermo Fisher Scientific, catalog no. 12-1171-82), 1:200 Sca-1-PE/Cy7 (BioLegend, catalog no. 122514), 1:1000 Ghost Dye Red 780 fixable viability dye (Cell Signaling Technology, catalog no. 18452), and/or 1:200 lineage-FITC (BioLegend catalog no. 133301). Cells were then washed twice with 2% FBS/PBS and run on the flow cytometer. For compensation, UltraComp eBeads compensation beads (Thermo Fisher Scientific, catalog no. 01-2222-42) were stained at the same concentration for the same amount of time as the cells to be analyzed, washed twice with 2% FBS/PBS, and run on the flow cytometer. For viability dye compensation, an aliquot of cells was stained only with 1:1000 Ghost Dye Red 780 fixable viability dye (Cell Signaling Technology, catalog no. 18452) for the same duration as the cells to be analyzed, washed twice with 2% FBS/PBS, and run on the flow cytometer.
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4

Phenotyping Lung and Colon ILC2 Cells

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Flow cytometry was used to detect the ILC2 cells in the lung and colon tissues. Briefly, the mouse lung/colon single-cell suspension in PBS containing 1% BSA was obtained from lung/colon tissues after homogenization, digestion and centrifugation. The cell suspension (100 µL; cell concentration 1 × 106 cells/mL) was incubated with the following antibodies (all from BD unless mentioned): the APC-CY7-CD45 (2D1), Lineage-FITC, CD3 (UCHT1), CD19 (HIB19), CD123 (7G3), CD11b (M1/70), CD11c (B-ly6), CD8 (RPA-T8), FceRI (AER-37 (CRA-1), CD14 (M5E2), CD4 (RPA-T4), CD56 (B159), PerCP-CY5.5-90.2 (30-H12, BioLegend, San Diego, CA, USA), PE-CY7-ST2 (DIH4), and PE-CD127 (SB/199), at room temperature for 30 min in dark. After washing with PBS twice, flow cytometry was performed to detect the ratio of LinCD45+CD127+ST2+KLRG1int cells and LinCD45+CD127+ST2KLRG1hi cells with the cytometer (LSR II, BD, USA). The data were analyzed using the Kaluza software (Beckman Coulter, Inc).
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5

Murine Hematopoietic Stem Cell Isolation

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Cells were harvested from femurs and tibias. Red blood cells were lysed using 0.16 M ammonium chloride. Cells were stained using the following antibodies: FITC lineage, BioLegend (CD3e, clone 145-2C11, CD4, clone GK1.5, CD8a, clone 53-6.7, B220, IgM, clone RMM-1, Mac-1, clone M1/70, Gr1, clone RB6-8C5, Ter119 respectively); PE-Cy7 Sca-1 (clone D7, BioLegend); APC c-Kit (clone ACK2, BioLegend; BV711 CD150 (clone TC15-12F12.2, BioLegend); PerCP Cy5.5 CD48 (clone HM48-1, BioLegend); BV421 human CD45 (clone HI30, BioLegend) [58 (link)]. Flow cytometry analysis was performed using a custom LSR Fortessa X-20 analyzer (BD Biosciences). Data analysis was performed using FlowJo software (BD Biosciences). Mouse HSCs were defined as lineage negative, Sca-1+, c-Kit+, CD150+, CD48− cells. Cellularity was based on the total nucleated cell count from 1 femur + 1 tibia.
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6

Flow Cytometry Analysis of Immune Cells

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Spleen, mesenteric lymph node (mLN), and ankle joints were processed for flow cytometry as we previously described [13 (link)]. The following antibodies were used for surface molecular staining: BV510-anti-CD45 (30F11), FITC-CD4 (JK1.5), FITC-Lineage (CD3/GR-1/CD11b/CD45R/TER-119), BV421-CD127 (A7R34), PerCP/Cy5.5-KLRG1 (2F1), PE-ST2 (RMST2-2), APC-ICOS (C398.4A), APC-NK1.1 (PK136), PerCP/Cy5.5-Ly6G(1A8), FITC-CD11b(M1/70), APC-F4/80 (BM8, all from BioLegend), and PE-SiglecF (1RNM44N, eBioscience). For intracellular staining, cells were fixed and permeabilized by the FoxP3/Transcription Factor Staining Buffer (eBioscience) and then stained with PE/Cy7-anti-T-bet (4B10), PE-anti-RORγt (AFKGS-9), PerCP/Cy5.5-IFN-γ (XMG1.2, BD Biosciences), APC-IL-4 (11B11, BioLegend), and AF647-IL-17A (TC11-18H10, BD Biosciences) at 4°C for 30 min. In some experiments, mLN cells and splenocytes were plated on a 12-well plate and incubated with cell activation cocktail (with Brefeldin A, BioLegend) at 37°C for 4 h before staining.
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