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Alexa flour 488 conjugated anti rabbit igg

Manufactured by Thermo Fisher Scientific
Sourced in United Kingdom, United States

Alexa Fluor 488-conjugated anti-rabbit IgG is a secondary antibody that specifically binds to rabbit immunoglobulin G (IgG) and is conjugated with the Alexa Fluor 488 fluorescent dye. This antibody can be used in various immunodetection techniques, such as Western blotting, immunohistochemistry, and flow cytometry, to visualize and detect rabbit primary antibodies.

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8 protocols using alexa flour 488 conjugated anti rabbit igg

1

DNA Damage Response Protein Immunoblotting

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Antibodies used were as follows: anti-CtIP rabbit polyclonal (1/1000; Bethyl, USA), anti-Mre11 mouse monoclonal (1/1000; GeneTex, USA), anti-NBS1 mouse monoclonal (1/ 1000; GeneTex), anti-actin mouse monoclonal (1/5000; Sigma-Aldrich), anti-Rad51 mouse polyclonal (1/500; Abnova, Taiwan), anti-Rad51 rabbit polyclonal (1/1000; Bio Academia, Japan), anti-BrdU mouse monoclonal (1/100; BD Pharmingen, USA), anti-BrdU rat polyclonal (1/250; Abcam, UK), anti-cyclin A rabbit polyclonal (1/100; Santa Cruz Biotechnology); Alexa Fluor 488-conjugated anti-mice IgG (1/1000; Molecular Probes), Alexa Flour 594-conjugated anti-mice IgG (1/1000; Molecular Probes), Alexa Fluor 594-conjugated anti-rabbit (1/1000; Invitrogen) and Alexa Flour 488-conjugated anti-rabbit IgG (1/1000; Life Technologies).
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2

Immunocytochemistry of Heart Tissue and Cardiomyocytes

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For immunocytochemistry, 5 μm frozen heart sections embedded in OCT compound (Tissue-Tek) were permeabilized with 0.1% Triton X-100 and incubated with primary antibodies. For immunostaining of rat cardiomyocytes, cells immobilized on collagen-coated glass slides were fixed with 4% paraformaldehyde for 15 min at room temperature, permeabilized with 0.1% Triton X-100 and then stained with primary antibodies.These samples were then treated with Alexa Flour 488-conjugated anti-rabbit IgG (A11008, Life Technologies) or Alexa Flour 488-conjugated anti-mouse IgG (A11001, Life Technologies). Cells or secrions were examined using a confocal microscope (Fluoview FV1000, Olympus) mounted on an Olympus IX81 epifluorescence microscope with a UPlanSApo × 60/1.35 oil immersion objective lens (Olympus).
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3

Immunofluorescence Staining of Intestinal Organoids

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Culture medium was removed, and the organoids in Matrigel were washed with DPBS. Fixation was done with 4% Paraformaldehyde until the Matrigel was disintegrated. Permeabilization was performed with 0.1% Tween-20 and 0.2% Triton-X100 in PBS buffer, and then, 5% BSA in DPBS was used to reduce non-specific binding. Samples were covered with primary antibodies at 4 °C overnight. The next day, the samples were embedded with secondary antibodies at room temperature for 2 h. Antibodies used for the staining were as follows: Mucin 2 (Santa Cruz Biotechnology, Santa Cruz, CA), Ki67 antibody (Abcam, Cambridge, MA), Lgr5 (Abgent, San Diego, CA), E-cadherin (Santa Cruz Biotechnology), ChromograninA (Santa Cruz), β –catenin (Abcam), Lysozyme (Diagnostic Biosystems, Fremont, CA), α-SMA (Sigma-Aldrich), Vimentin (BD Biosciences), and Alexa Flour 488 conjugated anti-rabbit IgG and Alexa Flour 594 conjugated anti-mouse IgG (Life Technologies, Gaithersburg, MD).
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4

Fluorescence Microscopy Imaging Protocol

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FISH experiments were performed as previously described54 (link),55 (link). To generate FISH probes, plasmid, cosmid, or PCR products were labeled by incorporation of Cy3-dCTP or Cy5-dCTP (GE Healthcare) with a random primer DNA labeling kit (Takara). The plasmid pRS140 and cosmid cos212 were used to prepare FISH probes against centromeres and telomeres, respectively54 (link),56 (link). FISH probes for other gene loci were generated using PCR-amplified DNA fragments (~15 kb).
IF experiments were performed as previously described52 (link),57 (link). Fixed cells were incubated with primary antibodies such as 1:10,000 diluted rabbit polyclonal anti-Myc (ab9106, Abcam) and 1:1,000 diluted mouse monoclonal anti-Pk (SV5-Pk1, Serotech). Cells were subsequently incubated with secondary antibodies such as 1:1,000 diluted Cy3-conjugated anti-mouse IgG (115-165-003, Jackson ImmunoResearch) and 1:1,000 diluted Alexa Flour 488-conjugated anti-rabbit IgG (A11034, Molecular Probes). FISH and IF images were captured using a Zeiss Axioimager Z1 fluorescence microscope with an oil immersion objective lens (Plan Apochromat, 100×, NA 1.4, Zeiss). The images were acquired at 0.2-μm intervals in the z axis controlled by Axiovision 4.6.3 software (Zeiss). More than 100 cells were analyzed for microscopic experiments.
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5

Visualizing Mitochondrial Dynamics in TAp73α-Expressing Cells

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ZR75–1 cells were seeded onto glass coverslips in 6-well plates overnight and transfected with TAp73α for 48 hrs. Detached cells were harvested and fixed onto slides by using cytospin (Shandon, Inc). For mitochondria staining, 100nM mitotracker (M22425, Molecular Probes Inc) were added to the culture medium for 15 minutes before fixing with 4% paraformaldehyde in PBS for 30 minutes at room temperature (RT). Fixed cells were washed with PBS and permeabilized with 0.05% Tween-20 in PBS for 10 minutes. After washing with PBS, the coverslips were incubated with anti-p73 (Ab-4, Calbiochem), diluted in 5% BSA/PBS for 1 hr at RT. They were then washed twice with PBS, followed by incubation with Alexa Flour 488 conjugated anti-rabbit IgG (Molecular Probes Inc) for 30 minutes at RT. After washing 3X with PBS, the coverslips were mounted with Vectashield® containing DAPI (Vector Labs, CA). Cells were examined under a Leica SpE confocal microscope.
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6

Antibody and Reagent Specifications for Cell Signaling Experiments

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Puromycin and G-418 were purchased from Cayman Chemical (Ann Arbor, Michigan, USA). AG1478, and U0126 were purchased from Selleck. The protein A/G agarose and EGF were purchased from Sigma (St louis, MO, USA). The following antibodies were used: anti-β-actin (#8457), anti-cleaved-caspase-3 (#9664), ani-caspase-3 (#9662), anti-cleaved PARP (#5625), anti-EGFR (#4267), anti-Erk1/2 (#4695), anti-phospho-Erk1/2 (#4370), anti-p38 (#8690), anti-phospho-p38 (#9211), anti-AKT(#9272), anti-phospho-AKT (Ser473) (#4060), anti-phospho-JNK (Thr183/Tyr185) (#9251), anti-JNK (#9252), anti-HA-Tag (#3724), anti-c-Cbl (#2747), anti-ubiquitin (P4D1) (#3936) from Cell Signaling Technology (Beverly, MA, USA); anti-Flag-Tag from Sigma-Aldrich (St Louis, MO, USA), anti-GAPDH (AC002), anti-phospho-EGFR (Y1068) (AP0820) from Abclonal Technology(Shanghai, China); anti-14-3-3σ (ab14123), anti-Bim (ab7888) from Abcam (Cambridge, MA, USA); anti-Bcl-2 (12789-1-AP) from proteintech (Chicago, IL, USA); Alexa Flour 488-conjugated anti- rabbit IgG, Alexa Flour 555-conjugated anti-rabbit IgG and Alexa Flour 555-conjugated anti-mouse IgG from Thermo Scientific (Rockford, IL, USA). HRP conjugated anti-rabbit IgG, HRP conjugated anti-mouse IgG from Beyotime Institute of Biotechnology; APC anti-human EGFR antibody (#352905) used for cell surface immunofluorescence staining from BioLegend (San Diego, CA).
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7

Immunofluorescence Visualization of Cellular Proteins

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Immunofluorescence (IF) was performed as previously described43 (link). Cells grown on coverslip were fixed with 1% pFA in PBS containing 200 mM sucrose for 10 min. Cells were washed three times with 1 ml PBS and treated with 0.5% Triton-X100 in PBS at 4 °C for 5 min. Cells were again washed three times with 1 ml PBST (PBS containing 0.05% Tween 20). Cells were soaked in PBS containing 1% BSA at room temperature for 10 min and incubated for 30 min with 1:1000-diluted primary antibodies, such as mouse monoclonal anti-IL-1β (Santa Cruz Biotechnologies, E7-2-hIL1β), mouse monoclonal anti-p21 (Santa Cruz Biotechnologies, sc-817), mouse monoclonal anti-FLAG M2 (Sigma–Aldrich), rabbit polyclonal anti-Pol II (Bethyl Laboratories, A300-653A), rabbit polyclonal anti-Myc (Abcam, ab9106), and mouse monoclonal anti-Pol II (Covance, 8WG16). Cells were washed three times with 1 ml PBST and incubated with 1:1000-diluted secondary antibodies, Alexa Flour 488-conjugated anti-rabbit IgG (Thermo Fisher Scientific) and/or Cy3-conjugated anti-mouse IgG (Jackson ImmunoResearch) in PBS for 15 min. After washing cells twice with PBST, the coverslip was mounted onto slide glass using ProLong Gold antifade mountant (Thermo Fisher Scientific). Images were captured by a Zeiss Axioimager Z1 fluorescence microscope with an oil immersion objective lens (Plan Apochromat, 63 × , NA 1.4, Zeiss).
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8

Immunocytochemistry for Myelination Analysis

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The cells were fixed using 4% paraformaldehyde (Wako) in PBS for 10 min, permeabilized with 0.5% Triton X-100 (Wako) for 30 min, and treated with 3% bovine serum albumin to block non-specific binding. Cells were further incubated with the primary antibodies for 16 h at 4°C followed by visualization using the appropriate secondary antibodies labeled with Alexa-488 and -594 with 4’, 6-diamidino-2-phenylindole (DAPI). The primary antibodies used include: mouse anti-myelin basic protein (MBP) (SMI-99, COVANCE); anti-βⅢ Tubulin (COVANCE); mouse anti-myelin associated glycoprotein (MAG), clone513 (Millipore); rabbit anti-neurofilament M (Merk). Alexa Flour 488-conjugated anti-rabbit IgG (Thermo Fisher Scientific) and Alexa Flour 594-conjugated anti-mouse IgG (Thermo Fisher Scientific) were used as secondary antibodies for immunocytochemistry. For quantification, myelination profiles visualized with MBP staining was quantified in 5 randomly selected fields using a 20x objective lens and the number of myelinated nerve fibers per arbitrary unit area was calculated.
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