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Pva dabco

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PVA-DABCO is a laboratory reagent used in various chemical and biological applications. It is a coupling agent that facilitates the formation of covalent bonds between molecules. The core function of PVA-DABCO is to enable cross-linking and stabilization of polymers, proteins, and other biomolecules. It is commonly used in the preparation of samples for microscopy, immunoassays, and other analytical techniques.

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24 protocols using pva dabco

1

Quantifying Nuclear Compartment Coupling

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Cells were transduced with the LV-XEP-2Gi2R carrying the IRES-linked sequences for 2xGFP:NES and 2xRFP:NLS. We used the HIV-Rev NES (LQLPPLERLTL) and the SV40 Large-T NLS (PKKKRKV). For imaging, cells were transferred to tissue culture-treated ibidi μ-slides coated with astrocytes for iNs, PluriPro matrix (Cell Guidance Systems) for iPSCs, and uncoated for fibroblasts. Cell were fixed with 4% PFA for 20 min at room temperature and mounted in PVA-DABCO (Sigma Aldrich). Confocal images were taken on Zeiss LSM710 or LSM780 series confocal microscope. All data for one NCC experiment were acquired from cells cultured, transduced, and processed in parallel and images were taken on the same microscope with exactly the same settings reused. For analysis, 2 μm confocal sections through the nuclear layer were acquired from three confocal z stacks. Image J software was used to identify nuclear ROIs based on binarized DAPI channels and green and red fluorescence means were measured in the ROIs. Because of the morphological complexity of the astrocyte iN co-cultures, neuronal nuclear ROIs were selected manually. To quantify the integrity of cellular NCC, GFPnuc/RFPnuc were calculated in transgenic cells using Microsoft Excel and further processes in GraphPad Prism 6.
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2

Immunocytochemistry for Protein Localization

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Immunocytochemistry was performed on cells grown on coverslips (VWR, Ø: 13 mm) and fixed in 4% PFA. Samples were blocked for 1 h at room temperature with 5% donkey serum in PBS-T (PBS with 0.25% triton-X). Primary antibodies were applied in blocking solution at room temperature overnight (GFP, rabbit, abcam: ab290, 1:1000; POU5F1, mouse IgG2b, Santa Cruz: sc-5279, 1:100) and washed off, 3x 10 min, with PBS-T and samples blocked for 10 min before applying secondary antibody in block solution for 1 h at room temperature (AlexaFluor 488 donkey anti-rabbit, 1:1000; AlexaFluor 568 donkey anti-mouse IgG (H + L), 1:1000). The secondary antibodies were washed off 3x 10 min in PBS-T before applying DAPI (1:1000 in PBS) for 10 min at room temperature. Coverslips were washed 3x 5 min with PBS before mounted on microscope slides with PVA DABCO (Sigma Aldrich).
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3

Autophagy Regulation in Alzheimer's Model

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C6 cells were transfected with the empty vector or a construct of overexpression for mAtg5 wild type, or mutated nonfunctional mAtg5. Cells were exposed during 20 h to 0.5 uM Aβ1–42 peptide (Sigma) previously incubated for 72 h with distilled water at 37°C to allow fibrils formation.
After exposure, cultures were washed twice with PBS, fixed with 4% paraformaldehyde/4% sucrose in PBS 30 min at RT and washed five times with PBS. Fixed samples were permeabilized with Triton X-100 0.25% in PBS (10 min at RT), washed three times with PBS and blocked with 1% BSA in PBST (Tween 20 0.1% in PBS) overnight at 4°C. Coverslips were incubated with a solution of goat anti-LC3 (Santa Cruz Lab) 1:100 and mouse anti-Aβ (clone 4G8, Covance) 1:1000 for 1 h, washed three times with PBS, and incubated with a solution of Alexa 488 donkey anti-goat (Life Technologies) 1:1000 in 1% BSA in PBST; 1 h. After three washes with PBS, samples were incubated with Alexa 555 goat anti-rabbit (Life Technologies) 1:1000, 1 h. Finally, coverslips were washed three times with PBS and mounted with PVA-DABCO (Sigma-Aldrich, USA). Representative images were obtained by Nikon Eclipse E80 confocal scanning laser microscope (Nikon Instech Co., Ltd., Karagawa, Japan). Negative controls were performed by incubating samples under the same conditions without one or both primary antibodies (data not shown).
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4

Immunohistochemical Detection of Fos

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The sections were washed in PBS for 10 min three times and then incubated in 1% H2O2/PBS for 20 min to quench endogenous peroxidase activity. The sections were then rinsed for 10 min three times in PBS and incubated in blocking solution (PBS + 0.3% Triton X-100, 1 mg/ml bovine serum albumin, and 5% normal donkey serum) for 1 h. The sections were then incubated for 24 h at room temperature with rabbit monoclonal anti-Fos antibody (Cell Signaling Technologies, catalog no. 2250, RRID: AB_2247211) diluted 1:1000 in PBS/0.5% Tween 20 and 5% normal donkey serum. Following incubation with the primary antibody, the sections were washed for 10 min three times in PBS and incubated for 2 h in undiluted rabbit ImmPress horseradish peroxidase reagent (Vector Laboratories, catalog no. MP-7451, RRID: 2631198). The sections were then washed in PBS for 10 min three times and then developed for 6 min in Vector peroxidase DAB substrate (Vector Laboratories, catalog no. SK-4100, RRID: 2336382) enhanced with nickel chloride. Following rinses in PBS for 10 min three times, the sections were mounted on Fisher Super Frost Plus slides, air dried, and coverslipped with PVA-DABCO (Sigma-Aldrich, catalog no. 10981). Following coverslipping, images were acquired using a Keyence BZX700 fluorescent microscope and analyzed using Fiji software.
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5

Immunofluorescent Labeling of c-Fos

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Fixed brains were kept in 30% sucrose at 4°C overnight and then sectioned on a cryostat (40 µm) slices. Sections were washed in PBS and incubated in a blocking solution (3% normal donkey serum and 0.3% triton-x in PBS) for 1 hr at room temperature. Sections were then incubated at 4°C for 12 hr with polyclonal anti-fos antibody made in rabbit (1/500 dilution) (c-Fos (9F6) Rabbit mAb CAT#2250, Cell Signalling Technology) in blocking solution. Following primary antibody incubation, sections were washed in PBS three times for 10 min and then incubated with anti-rabbit IgG (H + L) antibody (1/500 dilution) conjugated to Alexa Fluor 594 (red) (CAT# 8,889 S, cellsignal.com) for 1 hr at room temperature. Sections were washed in PBS three times for 10 min, incubated with DAPI (1/50,000 dilution in PBS), washed again in PBS, and mounted in glass slides using PVA-DABCO (Sigma).
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6

Immunofluorescence Analysis of Neuronal Cells

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Cells were fixed in 4% paraformaldehyde for 15 minutes. Cells were subsequently blocked and permeabilized in PBS containing 0.1%–0.2% Triton X-100 and 10% horse serum. Coverslips were incubated with primary antibody in blocking solution overnight at 4°C, washed in Tris-buffered saline, incubated with secondary antibodies for 30 minutes at room temperature (RT), counterstained with DAPI, washed, mounted on slides using PVA-DABCO (Sigma-Aldrich), and dried overnight protected from light. Fluorescent signals were detected using a Zeiss 710 confocal microscope and images were processed with ImageJ. Composite images of microfluidic device (Figure 6B and 6C) were obtained by stiching multiple consecutive images with overlapping areas to show axons. Cells were traced using Neurolucida (MBF Bioscience) for branched structure analysis.
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7

Immunohistochemistry of Mouse Brain Sections

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Immunohistochemistry of mouse brain sections was performed as previously described (Subramanian et al., 2011 (link)). Briefly, mouse tissues were permeabilized with 0.3% Triton X-100 in PBS followed by blocking in PBS containing 0.2% Triton X-100 and 10% horse serum. Floating sections were incubated with primary antibody in blocking solution overnight at 4 °C on a shaker, washed in Tris-buffered saline, incubated with secondary antibodies for 2 hours at room temperature (RT), counterstained with DAPI, washed, mounted on slides, coverslipped using PVA-DABCO (Sigma-Aldrich), and dried overnight protected from light.
The following antibodies and dilutions were used: GFP (1:500) Map2ab (1:1000), Elavl2 (1:250), Elavl2/4 (1:500), Lhx9 (1:50), Nestin (1:200), Scgn (1:250, Invitrogen), NeuN (mouse, 1:100, Millipore), Prkcd (1:100), Grik4 (1:100), OTX (1:100), GABA (1:1000), CTIP2 (1:500), and Vglut1 (1:500).
Fluorescence signals were detected using a Zeiss 710 confocal microscope and images were processed with Zen and ImageJ/Fiji (https://imagej.nih.gov/ij/). For larger tissue areas, such as human hippocampus, composite of multiple consecutive images with overlapping areas were shown (Figure 4F, Figure S2H).
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8

Optogenetic Activation of vmPFC-Amygdala Pathway

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vmPFC–amygdala: ChR2 mice received blue light in the amygdala (10 Hz, 5-ms pulses, 10 mW power) for 10 min. Animals were perfused 90 min after receiving optical stimulation. Following perfusion, brain slices were obtained as described above in ‘Histology’. c-Fos staining was performed as described previously46 (link). In brief, coronal sections containing the amygdala were washed in PBS (three 10-min washes), and were then incubated for 1 h in blocking solution with 0.2% Triton-X-100 and 2% normal donkey serum. Sections were then incubated overnight with anti c-Fos primary antibody (rabbit anti c-Fos 1:500, Cell Signaling Technology, cat. no. 2250S). The next day the sections were washed in PBS (three 10-min washes) and incubated at 1 h at room temperature with the secondary antibody at 1:500 dilution (donkey anti-rabbit antibody conjugated to Cy3, Jackson Laboratories). Slices were washed three times in PBS and mounted on slides with PVA-Dabco (Sigma). c-Fos counting was performed blinded to treatment group on a Leica TCS SP5 scanning laser confocal microscope. To stain cells against GABA the same procedure was employed, but this time using anti-GABA antibody (Sigma, cat. no. A2052).
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9

Immunofluorescent Staining of GFAP in Coronal Brain Sections

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Forty-micron coronal sections were collected with a sliding microtome. 2 sections per animal at 160 µm apart were selected around the injury site (Bregma + 0.5 mm) for immunofluorescent staining. Tissue sections were washed with PBS (3 x 10 min) followed by an incubation in a blocking buffer (PBS with 0.2% triton-X-100, 0.2% bovine serum albumin (BSA) and 2% donkey serum) for 1 h at room temperature. Sections were incubated with rabbit polyclonal antibody against GFAP (Z0334, 1:500; DAKO) in blocking buffer overnight at 4°C. Alexa Fluor 647 Donkey anti-Rabbit secondary antibody (A31573, 1:200; Invitrogen) was incubated with DAPI (NucBlue Fixed Cell ReadyProbes Reagent, 2 drops/mL; Thermo Fisher) in PBS with 0.2% triton-X-100, 0.2% BSA for 2 h at RT. Sections were washed with PBS (3 x 10 min) and then mounted on VistaVision HistoBond slides (VWR) with polyvinyl-alcohol mounting medium with DABCO (PVA-DABCO, Sigma) and sealed with a coverslip.
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10

Immunofluorescent Localization of CHIT-1

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Expression and localization of CHIT-1 were determined by qualitative observations on immunofluorescently labeled cells. A qualitative, as well as quantitative, approach was taken for the localization and analysis of cytokines, inflammatory markers, and trophic factors [36 (link)]. Briefly, mixed glial and enriched microglial cultures were plated onto poly-l-lysine-coated 13-mm circular coverslips (0.1 mg/ml). The cultures were then exposed to the ALS-CSF or CHIT-1 experimental groups and fixed with 4% paraformaldehyde (PFA) for 15 min at RT. Following blocking with 3% bovine serum albumin (BSA), the cultures were subsequently incubated with primary antibodies of interest followed by fluorescently labeled appropriate secondary antibodies (FITC or Cy3) (Table 1). TO-PRO-3-iodide (TOPRO) was used to stain the nucleus. The coverslips were then mounted using PVA-DABCO (Sigma-Aldrich, USA) and viewed under the laser scanning confocal microscope (Leica TCS SL, Germany), with excitation wavelengths at 488, 514, and 633 nm for FITC, Cy3, and TOPRO, respectively. In the case of double immunofluorescence, the antibodies raised in different animals were chosen and emission frequencies were segregated to avoid non-specific overlap of labeling.
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