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8 protocols using anti caspase 3

1

Sorafenib and FOXO3a Regulation in Apoptosis

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PD was purchased from Must Bio-Technology Co., Ltd. (Chengdu, China) and sorafenib was purchased from Selleckchem (Houston, TX, USA). Fetal bovine serum (FBS) was purchased from Bioind (Biological Industries, BeitHaEmek, Israel). The anti-FOXO3a, anti-FasL, anti-Bim, anti-TRAIL, anti-Akt and anti-Ubiquitin antibodies were purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA). The anti-p-Akt, anti-ERK and anti-p-ERK antibodies were obtained from Abcam (Shanghai, China). The anti-Caspase 3, anti-Cleaved Caspase 3, anti-Caspase 3 and anti-PARP antibodies were obtained from Beyotime Biotechnology, Inc. (Shanghai, China). The anti-CDK4, anti-CDK6 and anti-cyclin D antibodies were obtained from Boster Biological Technology, Inc. (Wuhan, China). The Z-VAD-FMK, MG132, pictilisib and MK2206 were purchased from Selleckchem (Houston, TX, USA). Lipofectamine™ 2000 was purchased from Invitrogen (Shanghai, China). The shRNA-FOXO3a plasmid, cDNA-Akt plasmid and cDNA-FOXO3a were purchased Shanghai GeneChem Co., Ltd (Shanghai, China).
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2

Immunoblotting of Cell Signaling Proteins

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Cells were collected and washed twice in PBS and lysed in NETN buffer (100 mM NaCl, 0.5 mM EDTA, 20 mM Tris-HCl [pH 8.0] and 0.5% Nonidet P-40). Cell lysate was mixed with SDS sample buffer and denatured at 100 °C for 8 min. Samples were electrophoretically separated on 10–12% SDS polyacrylamide gel. After electrophoresis, the protein was transferred to polyvinylidene difluoride (PVDF) membranes, then closed with 5% skim milk for 1 h. Following incubation overnight at 4 °C with primary antibodies: anti-ADRB2 (ab61778, Abcam), anti-CREB (#9197, Cell Signaling Technology) and anti-phospho-CREB (#9198, Cell Signaling Technology), anti-PSAT1 (A6707, ABclonal), anti-caspase3 (AC030, Beyotime Biotechnology), anti-cleaved caspase-3 (#9661, Cell Signaling Technology) and anti-β-actin (AC00, ABclonal). The membranes were washed three times with TBST and incubated with HRP secondary antibodies for 1 h at room temperature. Finally, the PVDF membranes were detected by enhanced chemiluminescence.
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3

Quantitative Analysis of Apoptosis Regulators

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In brief, total protein was extracted by RIPA lysis buffer (Beyotime), and was separated by 12% gel electrophoresis at constant pressure of 80V. The separated proteins were transferred to the PVDF membrane, and were blocked with TBST buffer containing 5% milk powder. The dilutions of the primary antibodies were: rabbit monoclonal Anti-Bcl-2 antibody (Abcam; 1:500), anti-caspase-3 (Beyotime; 1:500), and mouse monoclonal anti-human β-actin (Beyotime; 1:1000). Goat anti-rabbit IgG (1:10000) labeled with horseradish peroxidase (HRP) was utilized as the secondary antibody. ECL luminescent solution was added for the final imaging. Quantity ONE software was used for relative quantification of the proteins.
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4

Apoptosis and Inflammation Signaling Assay

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Primary antibodies included anti-Caspase-8 (Proteintech, 13423-1-AP), anti-Bax (Proteintech, 50599-2-Ig), anti-Bcl-2 (26593-1-AP), anti-Caspase-1 (Arigo, ARG57293), anti-Cytochrome C (Cyt C) (Abcam, Ab133504), anti-Cleaved-Caspase-9 (Abcam, Ab2324), anti-Cleaved-PARP (Abcam, Ab32561), anti-NLRP3 (Abcam, Ab263899), anti-p-JNK (Abcam, Ab124956); anti-PARP (Beyotime Biotechnology, AF1657), anti-Caspase-3 (Beyotime Biotechnology, AF0081), anti-JNK (Beyotime Biotechnology, AF1048); anti-Cleaved-Caspase-3 (Cell Signaling Technology, 9664T); anti-IL-1β (Arigo, ARG66285), anti-GSDMD (Arigo, A18281); and β-actin (Soiarbio, BL005B); secondary antibodies included HRP-conjugated Affinipure Goat Anti-Rabbit IgG (H + L) (Proteintech, SA00001-2) and HRP-conjugated Affinipure Goat Anti-Mouse IgG (H + L) (Proteintech, SA00001-1).
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5

Cytotoxic Effects of Zanthoxylum bungeanum

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Supercritical fluid (SCF) extract of Zanthoxylum bungeanum was purchased from Zhengzhou Xuemailong Food Spice Co., Ltd. in Henan Province, China. Both HCT-116 (human colon adenocarcinoma cell line), and HEK293T cells were obtained from the National Collection of Authenticated Cell Cultures in Shanghai, China. McCoy's 5A media, DMEM media, fetal bovine serum (FBS), and 0.25% trypsin solution were obtained from Invitrogen (Carlsbad, CA, USA). The Caspase 8 inhibitor Z-IETD-FMK and P53 inhibitor PFTα hydrobromide were obtained from MedChemExpress (Monmouth Junction, NJ, USA). Primary antibodies (anti-CDK4, anti-cyclin D1, anti-PCNA, anti-BAX, anti-Caspase 3, anti-Cleaved Caspase 3, anti-P53, anti-Bcl-2, anti-Caspase 9, anti-Cleaved Caspase 9, anti-Fas, anti-P21, anti-Caspase 8, anti-Cleaved Caspase 8, and anti-β-actin), anti-mouse, and anti-rabbit secondary were obtained from the Beyotime Institute of Biotechnology (Shanghai, China).
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6

Naringenin Modulates Cell Signaling Pathways

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Following the previously established procedure24 (link), post 24 h naringenin treatment, the cells were lysed using RIPA buffer. Protein expressions of β-actin, MMP9, PI3K, AKT, and Caspase-3 were assessed through SDS-PAGE, transferred onto a PVDF membrane, the blots were cut prior to hybridization with antibodies, and cropped blots incubated overnight at 4 °C with primary antibodies including anti-MMP9 (Beyotime, 1:1000), anti-mTOR (Beyotime, 1:1000), anti-PI3K (Cell signaling, 1:1000), anti-p-PI3K (Cell signaling, 1:1000), anti-AKT (Cell signaling, 1:1000), anti-p-AKT (Cell signaling, 1:1000), anti-EGFR (ABclonal, 1:1000), anti-Caspase-3 (Beyotime, 1:1000), and anti-β-actin (Cell signaling, 1:1000). Secondary antibodies used were either GAM (goat anti-mouse IgG) or GAR (goat anti-rabbit IgG) (ABclonal, 1:2000).
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7

Quantitative Protein Analysis Protocol

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Total protein was isolated using RIPA lysis buffer (Beyotime). Then, the protein sample was electrophoresed on 10% SDS-PAGE gel and electro-transferred onto a PVDF membrane (Millipore, Billerica, MA, USA). After blockage with skimmed milk, the membrane was incubated with primary and secondary antibodies one by one. The primary antibodies were as follows: anti-proliferating cell nuclear antigen (anti-PCNA, 1:2000, Boster, Wuhan, China), anti-caspase 3 (1:1000, Beyotime), anti-MMP-3 (1:2000, Boster), anti-PRAF2 (1:3000, Boster) and anti-β-actin (1:10,000, Boster). The secondary antibody was HRP-conjugated AffiniPure goat anti-rabbit IgG (H+L) (1:10,000, Boster). The signal was developed using BeyoECL Moon ECL Chemiluminescence Kit (Beyotime).
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8

Apoptotic Pathway Analysis in H22 Cells

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Anti-caspase-3, anti-cleaved caspase-3, Anti-Bcl-2 and anti-Bax were purchased from Beyotime Biotech Co., Ltd. (Shanghai, China). Anti-caspase-7, anti-cleaved-caspase-7, anti-caspase-8, anti-cleaved-caspase-8, anti-caspase-9, anti-cleaved-caspase-9, anti-PARP, anti-cleaved PARP, anti-mouse IgG-HRP and anti-rabbit IgG-HRP were purchased from Cell Signaling Technology. Anti-β-actin was purchased from Beijing ComWin Biotech Co., Ltd. (Beijing, China).
H22 cells were treated with different concentrations of CTPG (0, 100, 200, 300 and 400 μg/ml) or 0.3% DMSO for 24 h. Cells were collected and lysed with the Cell Lysis Solution RIPA (Beijing ComWin Biotech Co., Ltd) for 30 min on ice. Samples were spun down (12,000 g for 15 min at 4 °C) to collect the supernatants and protein concentrations were measured by BCA Kit (Thermo Fisher Scientific, USA). Equal amount of protein in each sample was isolated by 12% SDS-PAGE and transferred to PVDF membranes (Biosharp, China). After blocking with TBST buffer contained 5% nonfat milk, membranes were incubated with corresponding primary antibodies and secondary antibodies conjugated to horseradish peroxidase (HRP), respectively. After washing with TBST, the target proteins were detected by ECL assay kit (Beyotime, China).
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