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15 protocols using lc20 ad isocratic pump system

1

Multiangle Light Scattering Analysis of Protein Samples

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Experiments were conducted on a system comprising a Wyatt HELEOS-II multiangle light scattering detector and a Wyatt rEX refractive index detector linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser and SIL-20A autosampler). Work was conducted at room temperature (20 ± 2 °C). Sample injection volume was 100 μl at a protein concentration of 5 mg/ml. The samples were separated on a Superdex S200 10/300 (GE Healthcare) using 80 mm MES (pH 5.5), 200 mm NaCl as buffer. Shimadzu LC Solutions software was used to control the HPLC and Astra V software for the HELEOS-II and rEX detectors. Data were analyzed using the Astra V software. Molecular weights were estimated using the Zimm fit method (33 (link)) with 1 degree. A value of 0.19 was used for protein refractive index increment (dn/dc).
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2

SEC-MALLS Analysis of EnvSia156

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SEC-MALLS experiments were run in 20 mM HEPES 7.4, 300 mM NaCl buffer. The injected sample comprised 100 µL of EnvSia156 at 1.8 mg mL−1 in 20 mM HEPES pH 7.4, 100 mM NaCl, 1 mM DTT. Experiments were conducted on a system comprising a Superdex 200 10/30 GL (GE Healthcare) size exclusion chromatography column, a Wyatt HELEOS-II multi-angle light scattering detector and a Wyatt rEX refractive index detector linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser, and SIL-20A autosampler). Work was conducted at room temperature (20 ± 2 °C). All solvents and buffers were 0.2 µm filtered before use and a further 0.1 µm filter was present in the flow path. Shimadzu LC Solutions software was used to control the HPLC and Astra V software for the HELEOS-II and rEX detectors. All data were analyzed using the Astra V software. Molecular masses were estimated using the Zimm fit method with degree 1. A value of 0.16 mL g−1 was used for protein refractive index increment (dn/dc), after calibration with a 2.5 mg mL−1 sample of BSA.
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3

Multi-Angle Light Scattering Analysis

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Experiments were conducted on a system comprising a Wyatt HELEOS-II multi-angle light-scattering detector and a Wyatt rEX refractive-index detector linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser and SIL-20A autosampler). Work was conducted at room temperature (20 ± 2°C). The sample-injection volume was at 100 µl at a protein concentration of 2 mg ml−1. The sample was separated on a Superdex 200 Increase 10/300 GL column (GE Healthcare) using 20 mM HEPES, 200 mM NaCl, pH adjusted to 7.4 with NaOH (0.2 µm filtered) as buffer. A further 0.1 µm filter was present in the flow path. Shimadzu LabSolutions software was used to control the HPLC and the ASTRA 7 software was used for the HELEOS-II and rEX detectors. The data were analysed using the ASTRA 7 software. Molecular masses were estimated using the Zimm fit method with degree 1 (Zimm, 1945 ▸ ). A value of 0.182 was used for the protein refractive-index increment (dn/dc).
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4

Multiangle Light Scattering Protein Analysis

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Experiments were conducted on a system comprising a Wyatt HELEOS-II multiangle light scattering detector and a Wyatt rEX refractive index detector, linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser and SIL-20A autosampler). Work was conducted at room temperature (20 ± 2°C). Sample injection volume was 100 μL at a protein concentration of 0.8 mg/mL. The samples were separated on a Superdex S200 10/300 (GE Healthcare) using 20 mM HEPES (pH 7.4), 200 mM NaCl as buffer. Shimadzu LC Solutions software was used to control the HPLC and Astra V software for the HELEOS-II and rEX detectors. Data were analyzed using the Astra V software. Molecular weights were estimated using the Zimm fit method (Zimm, 1945 ) with 1 degree. A value of 0.182 was used for protein refractive index increment (dn/dc).
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5

Size-exclusion Chromatography with MALS

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Experiments were conducted on a system comprising a Wyatt HELEOS-II multiangle light scattering detector and a Wyatt rEX refractive index detector linked to a Shimadzu liquid chromatography (LC) system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser, and SIL-20A autosampler). Experiments were conducted at room temperature (20 ± 2 °C). Solvents were filtered through a 0.2 µm filter prior to use, and a 0.1 µm filter was present in the flow path. The column was equilibrated with >2 CV of buffer (50 mM NaPi, 300 mM NaCl pH 7.4) before use and buffer was infused at the working flow rate until baselines for UV, light scattering, and refractive index detectors were all stable. The sample injection volume was 100 µL of protein at 6 mg mL−1 in 50 mM NaPi buffer, 300 mM NaCl pH 7.4. Shimadzu LC Solutions software was used to control the LC and Astra V software for the HELEOS-II and rEX detectors. The Astra data collection was 1 min shorter than the LC solutions run to maintain synchronization. Blank buffer injections were used as appropriate to check for carryover between sample runs. Data were analyzed using the Astra V software. Molecular weights were estimated using the Zimm fit method with degree 1. A value of 0.158 was used for protein refractive index increment (dn/dc).
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6

SEC-MALLS Analysis of OGT Protein

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SEC-MALLS analysis was conducted on a system comprising a Wyatt HELEOS-II multi-angle light scattering detector and a Wyatt rEX refractive index detector linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser and SIL-20A autosampler). Experiments were conducted at room temperature. A Superdex S200 10/300 GL column pre-equilibrated in running buffer (20 mM HEPES 7.5, 200 mM NaCl) was used for separation. Sample injection was 100 µl of 3 mg/ml OGT. Flow rate was set at 0.5 ml/min. Shimadzu LabSolutions software was used to control the HPLC and Astra 7 software for the HELEOS-II and rEX detectors. The Astra data collection was 1 min shorter than the LC solutions run to maintain synchronisation. Data were analysed using the Astra 7 software and figures created using GraphPad Prism 5. MWs were estimated using the Zimm fit method with degree 1. A value of 0.182 was used for protein refractive index increment (dn/dc).
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7

SEC-MALS Analysis of Protein Samples

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Experiments were conducted on a system comprising a Wyatt HELEOS-II multi-angle light scattering detector and a Wyatt rEX refractive index detector linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser and SIL-20A autosampler) and the assays performed at 20°C. Solvent was 0.2 μm filtered before use and a further 0.1 μm filter was present in the flow path. The column was equilibrated with at least 2 column volumes of 40 mM Tris–HCl [pH 8], 500 mM NaCl, 1 mM EDTA, 20 mM imidazole, 2.5% (v/v) glycerol before use and flow was continued at the working flow rate until baselines for UV, light scattering and refractive index detectors were all stable.
The sample injection volume was of 100 μl, the Shimadzu LabSolutions software was used to control the HPLC and the Astra 7 software for the HELEOS-II and rEX detectors. The Astra data collection was 1 min shorter than the LC solutions run to maintain synchronisation. Blank buffer injections were used as appropriate to check for carry-over between sample runs. Data were analysed using the Astra 7 software. Molecular weights were estimated using the Zimm fit method with degree 1 and a value of 0.179 was used for protein refractive index increment (dn/dc).
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8

Multi-Angle Light Scattering Analysis

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Experiments were conducted on a system comprising a Wyatt HELEOS-II multi-angle light scattering detector and a Wyatt rEX refractive index detector linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser and SIL-20A autosampler) and the assays performed at 20°C. Solvent was 0.2 μm filtered before use and a further 0.1 μm filter was present in the flow path. The column was equilibrated with at least 2 column volumes of 40 mM Tris–HCl [pH 8], 500 mM NaCl, 1 mM EDTA, 20 mM imidazole, 2.5% v/v glycerol before use and flow was continued at the working flow rate until baselines for UV, light scattering and refractive index detectors were all stable.
The sample injection volume was of 100 μl, the Shimadzu LabSolutions software was used to control the HPLC and the Astra 7 software for the HELEOS-II and rEX detectors. The Astra data collection was 1 minute shorter than the LC solutions run to maintain synchronisation. Blank buffer injections were used as appropriate to check for carry-over between sample runs. Data were analysed using the Astra 7 software. Molecular weights were estimated using the Zimm fit method with degree 1 and a value of 0.179 was used for protein refractive index increment (dn/dc).
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9

Multi-angle Light Scattering Analysis of Proteins

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Experiments were conducted on a system comprising a Wyatt HELEOS-II multi-angle light scattering detector and a Wyatt rEX refractive index detector linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser and SIL-20A autosampler). Work was conducted at room temperature (20 ±2°C). Sample injection volume was 100 µL at a protein concentration of 5 mg/ml. The samples were separated on a Superdex S200 10/300 (GE Healthcare) using 10 mM Tris pH 7, 250 mM NaCl as buffer. Shimadzu LC Solutions software was used to control the HPLC and Astra V software for the HELEOS-II and rEX detectors. Data were analyzed using the Astra V software. MWs were estimated using the Zimm fit method with degree 1. A value of 0.174 was used for protein refractive index increment (dn/dc).
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10

Characterization of TssA1 and TssA2 Proteins by SEC-MALLS

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For size exclusion chromatography-multiangle laser light scattering (SEC-MALLS), native TssA1B (1–373) and TssA1B CTD (294–373) were purified as described above and analysed on a Superose-6 10/300 column in 10 mM phosphate buffer (pH 7.4) containing 2.7 mM KCl and 137 mM NaCl, whilst purified His6.TssA2A (4.5 mg/ml), His6.TssA2A Nt2-CTD (6.8 mg/ml) and His6.TssA2A CTD (6.0 mg/ml), were filtered (0.2 µm pore size) and analysed on an S200 10/300 column (GE Healthcare) in 50 mM Tris.HCl (pH 8.0), 500 mM NaCl. These were carried out at ~20 °C using a system comprising a Dawn Heleos-II multi-angle light scattering detector, an Optilab rEX refractive index detector and a QELS Plus module (all items by Wyatt Technology) linked to a Shimadzu HPLC system (SPD-20A UV detector, LC20-AD isocratic pump system, DGU-20A3 degasser and SIL-20A autosampler) at the Molecular Interactions Lab, University of York, UK. Peak areas chosen for analysis were defined by Astra software (Wyatt Technology).
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