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217 protocols using paraformaldehyde (pfa)

1

Quantifying Osteogenic and Adipogenic Differentiation

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After the induction of osteogenic differentiation, mineral deposition was assessed by ARS (Cyagen Biosciences). Cells were fixed in 4% paraformaldehyde (Sangon Biotech, Shanghai, China) for 15 min at room temperature and then washed with distilled water twice. A 1% solution of Alizarin Red was added and incubated for 10 min at room temperature; this was followed by rinsing with distilled water. Photographs of images were then taken using an inverted microscope (Leica, Wetzlar, Germany).
After the induction of adipogenic differentiation, fat droplet was assessed by Oil Red O staining kit (Cyagen Biosciences). Cells were fixed in 4% paraformaldehyde (Sangon Biotech, Shanghai, China) for 15 min at room temperature and then washed with distilled water twice. An Oil Red O staining was added and incubated for 30 min at room temperature; this was followed by rinsing with distilled water. Photographs of images were then taken using an inverted microscope (Leica, Wetzlar, Germany).
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2

Histological Analysis of Extracted Teeth

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The animals were killed under general anesthesia provided by Jiagan Biotech Company (pentobarbital; Sinopharm Chemical, China) at 30 mg/kg intravenously. The carotid arteries were exposed and cannulated. The animals were euthanized with additional pentobarbital (Sinopharm Chemical, China) at a dose of 90 mg/kg intravenously. The animals were perfused with 4% paraformaldehyde (Sangon Biotech, Shanghai, China). The involved teeth were extracted and fixed in 4% paraformaldehyde (Sangon Biotech, Shanghai, China) for 24 h at 4 °C. The samples were demineralized in 10% EDTA for 2 months at 37 °C then embedded in paraffin. The sections with a thickness of 5 μm were cut in a mesiodistal direction for HE staining and immunohistochemistry (IHC).
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3

BmβGRP4 Overexpression Modulates Apoptosis

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The expression levels of apoptosis-related genes after BmNPV-induced apoptosis in BmβGRP4 overexpressed BmN cells were detected by RT-qPCR analysis. The BmβGRP4 overexpressed BmN cells were infected with BV-EGFP at an MOI of 2 and the cells were collected at 36 h p.i. to analyze the relative expression levels of BmApaf1, BmDredd, BmBuffy, BmCaspaseNC, BmICE and BmCaspase1 through RT-qPCR; all of the primers are shown in Table S2. The pIZT-mCherry vector transfected cells were used as a control. Three biologically independent samples were used.
The apoptosis morphology of BmN cells was determined by fluorescence microscopy. First, BV-EGFP at an MOI of 2 was added to the BmβGRP4 overexpressed BmN cells. Then, at 36 h p.i., all culture medium was removed, and the cells were fixed in 4% paraformaldehyde (PFA; Sangon) for 10 min at room temperature; after the removal of all 4% PFA, the cells were washed with PBS (pH 7.4) three times for 5 min each. After washing, the cell nuclei were stained with DAPI (Beyotime, Shanghai, China) in the dark for 10 min at room temperature. Finally, the cell morphology was examined using an inverted microscope DMi8 camera. The pIZT-mCherry vector transfected BmN cells were used as a control in this experiment. Three biologically independent samples were used.
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4

Immunolocalization of Hc-HRG-2 in Adult Haemonchus contortus

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Live adult H. contortus, derived from the sheep abomasa of euthanized animals, were fixed in 4% (w/v) paraformaldehyde (Sangon Biotech, Shanghai, China) for 2 days. They were subsequently embedded in paraffin and sectioned to a thickness of 5 μm. The sections were bathed in 100 °C citrate antigen retrieval solution (pH 6.0) for 20 min and then blocked in 10% donkey serum (Absin, Shanghai, China) at 4 °C overnight. Samples were incubated in the primary antibodies (mouse anti-Hc-HRG-2 polyclonal antibody) at a 1:200 dilution followed by fluorescein-conjugated secondary antibody [Alexa FlourTM 488 donkey anti-mouse IgG (H+L) (Invitrogen)] at a 1:500 dilution in the presence of 0.5 μg/ml 4’, 6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich, Shanghai, China) stain for 20 min. Transfected HEK293T cells grown on cell slides (WHB cientific, Shanghai, China) were fixed with 4% (w/v) paraformaldehyde for 20 min at 4 °C, permeabilized with 0.1% (v/v) Triton X-100 (Sangon Biotech) for 10 min and then stained by DAPI for 30 min. Mounted slides were visualized using a laser scanning confocal microscope (Zeiss LSM 780, Jena, Germany).
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5

Assessing Lung Inflammation and Fibrosis

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On days 3, 7, 14, and 21 post-BLM treatment, the lungs from mice in each treatment group were collected. The right lungs were frozen until further use, while the left lung was collected after inflating with 1 ml of 4% paraformaldehyde (Sangon, Shanghai, China) under constant pressure and placed in 4% paraformaldehyde. The left lung tissues were then embedded in paraffin blocks and cut into 5 μm sections for hematoxylin and eosin (H&E) staining or Masson trichrome staining to observe the inflammatory cell infiltration and collagen deposition respectively (NanJing Jiancheng Bioengineering Institute, Nanjing, China).
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6

Assessing Mineral Deposition in MSCs

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Mineral deposition was assessed by ARS (Cyagen Biosciences, Guangzhou, China). MSCs were fixed in 4% paraformaldehyde (Sangon Biotech, Shanghai, China) for 10 min at room temperature, washed with distilled water, treated with ARS (0.5%) for 30 min at room temperature, and rinsed with distilled water. The absorbances at 560 nm of 200-μL suspensions of stained cells in 96-well plates were measured using a microplate reader (ELX808; BioTek, Winooski, VT, USA). The readings were normalized to the total protein concentrations.
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7

Immunofluorescence Staining of ALDOA Protein

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For immunofluorescence (IF) testing, the cells were fixed with 4% paraformaldehyde (Sangon Biotech, Shanghai, China) for 10 min and then permeabilized with Triton X-100 (Invitrogen; Thermo Fisher Scientific, Inc.) for 15 min. ALDOA antibody (rabbit polyclonal; cat. no. A1142; 1 : 100 dilution; ABclonal Technology) was used for IF incubation, while 4,6-diamidino-2-phenylindole (Beyotime Biotechnology) was added for cell nucleus staining. The fluorescent images were then captured under a fluorescence microscope (Olympus Corporation, Tokyo, Japan).
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8

Targeting IGF1R with siRNA in Cancer Cells

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DOX hydrochloride was purchased from Nanjing Oddfoni Biological Technology Co., Ltd (Nanjing, China). The siRNAIGF1R with the sequence of 5′-CAUACUGCGCUCUAUAGAUTT-3′ was selected for targeting the IGF1R gene. The double-stranded siRNAIGF1R and FAM-labeled siRNAIGF1R (FAM: carboxyfluorescein) were designed and chemically synthesized by GenePharm Co., Ltd (Shanghai, China). 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) cell proliferation and cytotoxicity assay kit, Annexin V-FITC apoptosis detection kit, Hoechst 33342, 4% paraformaldehyde, folate, biotin, RPMI-1640 medium, phosphate-buffered saline (PBS), fetal bovine serum (FBS), bicinchoninic acid (BCA) protein assay kit and polyvinylidene difluoride (PVDF) membrane were provided by Sangon Biotech Co., Ltd (Shanghai, China). Mouse monoclonal IGF1R beta chain antibody and HRP-conjugated beta-actin antibody, HRP-conjugated goat anti-mouse IgG (H + L) were from Proteintech Group, Inc (USA). All other reagents used were analytical grade and ultrapure water (18.25 MΩ) was used throughout the study.
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9

Subcutaneous CRC Tumor Xenograft in Mice

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Twenty-four athymic male BALB/c nude mice (4–5 weeks old, 15-18 g) were purchased from Shanghai Lab. Animal Research Center and housed in specific-pathogen-free conditions. 3.0 × 106 CRC cells were injected subcutaneously into the left hind flank of each mouse. Tumor volumes were monitored every four days a week by a caliper and calculated according the formula as follows: volume = 0.5 × length×width2. Four weeks after the injection, mice were sacrificed and the tumors were harvested. Tumor weights were measured and the harvested tumor samples were reserved in 4% paraformaldehyde (Sangon Biotech, Shanghai, China).
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10

Pluripotency Assessment of Induced Pluripotent Stem Cells

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The pluripotency of E- and CON-piPSCs was determined by AP staining solution (AST Fast Red TR and α-Naphthol AS-MX Phosphate (Sigma Aldrich)) according to the manufacturer’s instruction. In brief, the piPSCs were incubated with 4% paraformaldehyde (Sangon Biotech, Shanghai, China) for 15 min and then washed twice with PBS. Afterwards, the cells were incubated with 0.1 M Tris Buffer consisting of 1.0 mg/mL Fast Red TR and 0.4 mg/mL Naphthol AS-MX for 20 min. Then, the pluripotency of piPSCs was detected by the color intensity of colonies using a phase-contrast microscope (Nikon, Tokyo, Japan) [26 (link)].
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