The largest database of trusted experimental protocols

21 protocols using hybrid r rna extraction kit

1

Canine Gallbladder Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA extraction was performed using a Hybrid-R RNA extraction kit (GeneAll Biotechnology, Seoul, Republic of Korea) according to manufacturer’s protocol, and RNA levels were determined using an automated microplate spectrophotometer (Epoch, BioTek Instruments Inc., Winooski, VT, USA). cDNA was synthesized using the RNA to cDNA EcoDry Premix (Clontech Laboratories Inc., Mountain View, CA, USA) with 1000 ng of extracted total RNA as a template, and the newly synthesized cDNA was amplified using real-time PCR in triplicate with a SYBR® Premix Ex Taq II (Takara Bio Inc., Otsu, Japan) and StepOnePlus Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) according to the manufacturer’s instructions. The level of a housekeeping gene, glyceraldehyde 3-phosphate dehydrogenase (GAPDH), was used for the normalization of leptin and leptin receptor expression levels. Primers for leptin and the leptin receptor in the canine gallbladder were reported previously [18 (link)], and primer sequences are shown in Table 1.
+ Open protocol
+ Expand
2

Quantitative RNA Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated using Hybrid-R RNA extraction kit (GeneAll, Seoul, Korea). One μg of total RNA was subject to cDNA synthesis, using PrimeScript RT-PCR kit (TaKaRa Korea, Seoul, Korea). Real-time PCR was performed on CFX96 instrument (Bio-Rad, Hercules, CA, USA) using EvaGreen Supermix (Bio-Rad). The primer sequences used for the quantitation of target genes are illustrated in Table 1. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (human) or β-actin (mouse) was used as an internal control.
+ Open protocol
+ Expand
3

RNA Extraction and cDNA Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
At each time point (1, 7, 14, and 21 days), the total RNA was extracted from MSC-seeded membranes using a Hybrid-R RNA extraction kit (GeneAll, Seoul, Korea). The extraction was performed according to the kit’s manual. DNase I from Thermo Fisher Scientific (Hamburg, Germany) was used to eliminate genomic DNA following the manufacturer’s manual. The obtained RNA for different groups was then normalized based on their RNA content, obtained by a NanoDrop spectrophotometer (ND-1000, Thermo Fisher Scientific, MA, USA). The cDNA synthesis was performed using a PrimeScript RT reagent Kit (TaKaRa, Shiga, Japan) following the kit’s procedure, using a Genius thermocycler (Techne, Cambridge, UK).
+ Open protocol
+ Expand
4

Hesperetin Cytotoxicity and Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hesperetin was obtained from Sigma-Aldrich (W431300, Germany). Cell culture reagents, including culture medium (L0093) and antibiotics (L0022) were obtained from Biowest (France). Fetal bovine serum (FBS) was purchased from Biosera (FB-1001/100, France). Hybrid-R RNA extraction kit (305 − 101, GeneAll Biotechnology, Korea) was used for the isolation of total cellular RNA and the corresponding cDNA was synthesized with HyperScript™ RT Master Mix (601–710, GeneAll Biotechnology, Korea). RealQ Plus 2x SYBR Green Master Mix high ROX™ (A325402, Ampliqon, Denmark) was used for real-time PCR. BCA Protein Assay Kit (23,225) was purchased from Thermo Fisher Scientific, UK). RIPA cell lysis buffer (PL008-5X) was attained from Biobasic (Canada). All the chemicals, including MTT (M5655), dimethyl sulfoxide (DMSO) (67-68-5), and general laboratory reagents were obtained from Sigma-Aldrich (Germany).
+ Open protocol
+ Expand
5

Quantitative Analysis of Antioxidant Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using a Hybrid-R RNA extraction kit (GeneAll Biotechnology, Seoul, South Korea). cDNA was synthesized by M-MLV cDNA Synthesis kit (Enzynomics, Daejeon, South Korea) according to the supplier’s instructions. Quantitative real-time PCR was performed using TOPrealTM qPCR 2X PreMIX (Enzynomics) on a CFX Connect Real-Time PCR Detection system (Bio-Rad Laboratories, Hercules, CA, USA). Primers used were 5’-AGGGCATCATCAATTTCGAG-3’ (sense) and 5’-TGCCTCTCTTCATCCTTTGG-3’ (antisense) for human SOD1 (NCBI gene ID: 6647); 5’-GTGTGATGGTCCTTCCAACC-3’ (sense) and 5’-CTGACATCCTCTGGCTCACA-3’ (antisense) for human Prdx6 (NCBI gene ID: 9588); 5’-CAGTCTCAAGTATGTCCGT-3’ (sense) and 5’-AGGCTCAATGTTGATGGT-3’ (antisense) for human Gpx2 (NCBI gene ID: 2877); 5’-TTGGCTACCTTGCAGTTCGT-3’ (sense) and 5’-ATGTGAACCATCGCAGGCA-3’ (antisense) for human CISD2 (NCBI gene ID: 493856); 5’-CATGTACGTTGCTATCCAGGC-3’ (sense) and 5’-CTCCTTAATGTCACGCACGAT-3’ (antisense) for human β-actin (NCBI gene ID: 60). Ratio of target gene fold-change was normalized to human β-actin expression using comparative CT (2-ΔΔCt) method.
+ Open protocol
+ Expand
6

Isolation and Quantification of Osteogenic Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolation of mRNA was carried out by using a Hybrid-R RNA Extraction Kit (GeneAll, Korea). Complementary DNA was prepared by using a PrimeScript II First-strand cDNA Synthesis kit (Takara, Japan). An ABI Prism 7000 Sequence Detection System (Applied Biosystems, USA) was used to amplify the desired DNA. Green Mix (Enzo Life Science, USA) was used to detect gene expressions. Normalization was done with the help of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and was quantified by using the ΔΔCt method [25 (link)].
All data were compared with that of fresh Ad-MSCs, which were used as the control. The primer sequences of target genes, runt-related transcription factor 2 (Runx2), β-catenin, osteopontin (OPN), Bone morphogenetic protein 7 (BMP-7), and housekeeping gene GAPDH are shown in Table 1.
+ Open protocol
+ Expand
7

Quantitative Real-Time PCR Protocol for RNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated using a Hybrid-R RNA extraction kit (GeneAll, Seoul, Korea). Total RNA (1 μg) was subject to cDNA synthesis, using PrimeScript RT-PCR kit (TaKaRa Korea, Seoul, Korea). Real-time PCR was performed on a CFX96 instrument (Bio-Rad, Hercules, CA, USA) using EvaGreen Supermix (Bio-Rad, Hercules, CA, USA). The primer sequences used for the quantitation of target genes are illustrated in Table 1. GAPDH was used as an internal control.
+ Open protocol
+ Expand
8

Quantitative Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using the Hybrid-R RNA Extraction Kit (GeneAll, Seoul, Korea). cDNA was synthesized from total RNA (1 μg) using AmfiRivert cDNA Synthesis Platinum Master Mix (GenDEPOT). Real-time RT-PCR analysis was performed using SYBR mix (ELPIS Biotech, Daejeon, Korea) on a CFX384 real-time system, according to the manufacturer’s instructions (BioRad, Hercules, CA, USA). The mRNA level of individual genes was normalized by that of GAPDH. PCR primer sequences against individual genes are listed in Table 1.
+ Open protocol
+ Expand
9

RNA Extraction and RT-qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using a Hybrid-R RNA extraction kit (GeneAll, Seoul, Republic of Korea). Synthesis of cDNA from total RNA (1 μg) was conducted using AmfiRivert cDNA Synthesis Platinum master mix (GenDEPOT, Austin, TX, USA). Real-time RT-PCR analysis was performed using SYBR mix (ELPIS Biotech, Daejeon, Republic of Korea) on the CFX384 real-time system as recommended by the manufacturer (BioRad, Hercules, CA, USA), and the mRNA level of individual genes was normalized by that of GAPDH. PCR primer sequences against individual genes are listed (Table 1).
+ Open protocol
+ Expand
10

Quantitative Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the MSCs using Hybrid-R™ RNA Extraction Kit (GeneAll, Seoul, South Korea), followed by treatment with DNase I (RNase-free; Invitrogen, Carlsbad, CA, USA) at 37 °C for 15 min to eliminate DNA contamination. Reverse transcription reactions were performed to synthesize cDNA using RevertAid M-MuLV Reverse Transcriptase Kit (Fermentase, Hanover, Germany) according to the manufacturer’s instructions. RT-qPCR was carried out with the SYBR Green I Master Mix kit (Ampliqon, Copenhagen, Denmark) using the ABI 7500 System (Applied Biosciences, Foster City, CA). The copies of target genes were normalized to reference gene GAPDH RNA level as the internal normalization control. Relative expression was calculated using the 2-ΔΔct method. Sequences of Primers are provided in Supplementary Table 1.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!