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Rna pre pure kit

Manufactured by Tiangen Biotech
Sourced in China

The RNA Pre-Pure kit is a laboratory product designed for the purification of RNA from various biological samples. The kit utilizes a silica-based membrane technology to efficiently capture and purify RNA molecules, allowing for their subsequent analysis and applications.

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6 protocols using rna pre pure kit

1

Macrophage Response to S. pneumoniae

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Macrophages were infected with the S. pneumoniae D39 at an MOI of 1 for 9 h. Total RNA was extracted by using the RNA Pre-Pure kit (Tiangen, Beijing, China). Complementary DNA was then synthesized by PrimeScript RT reagent Kit (TaKaRa, Dalian, China) according to the manufacturer’s instructions. Quantitative real-time RT-PCR was carried out using SsoFast Eva Green Super-Mix (Bio-Rad, Hercules, CA, USA) and performed on a Bio-Rad CFX 96 instrument. Primers were used as follows:
IL-1β forward 5′- GAA ATG CCA CCT TTT GAC AGT G and reverse 5′- TGG ATG CTC TCA TCA GGA CAG, β-actin forward 5′-TGG AAT CCT GTG GCA TCC ATG AAA C, and reverse 5′- TAA AAC GCA GCT CAG TAA CAG TCC G.
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2

Quantitative Analysis of Pathogen-Induced Inflammatory Responses

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Mice and macrophages were infected with P. multocida as described above. The samples (BALF and lung tissue) were collected at 3, 6, 9, and 24 h after infection and total RNA (500 ng) was extracted using the RNA Pre-Pure kit (Tiangen, Beijing, China). Then, complementary DNA was synthesized with the PrimeScript RT reagent Kit (TaKaRa, Dalian, China) according to the manufacturer’s instructions. Quantitative real-time RT PCR was carried out using SsoFast Eva Green Super-Mix (Bio-Rad, Hercules, CA, USA) and performed on a Bio-Rad CFX 96 instrument. Primers [12 (link)–16 (link)] used in this study are shown in Table 1. The reaction procedure was the following: 95 °C, 2 min; 95 °C, 5 s, 40 cycles; 60 °C, 30 s; 95 °C, 5 s; 60 °C, 5 s; 95 °C, 2 min. Three replicates were set for each gene, and 2-ΔΔCT was used for relative quantitative analysis.

Primer and probe sequences for qPCR.

Gene5′3’sequence
β-actinForwardGTGACGTTGACATCCGTAAAGA
ReverseGCCGGACTCATCGTACTCC
il-1βForwardGAA ATG CCA CCT TTT GAC AGT G
ReverseTGG ATG CTC TCA TCA GGA CAG
nlrp3ForwardATT ACC CGC CCG AGA AAG G
ReverseCAT GAG TGT GGC TAG ATC CAA G
cxcl1ForwardACT GCA CCC AAA CCG AAG TC
ReverseTGG GGA CAC CTT TTA GCA TCT T
cxcl2ForwardCCA ACC ACC AGG CTA CAG G
ReverseGCG TCA CAC TCA AGC TCT G
cxcr2ForwardATG CCC TCT ATT CTG CCA GAT
ReverseGTG CTC CGG TTG TAT AAG ATG AC
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3

Quantifying Cytokine Levels in S. suis-Infected PAM-Tang Cells

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To quantify cytokine levels induced by S. suis in PAM-Tang cells, all the supernatants were removed from the wells and collected on sequential samples of cell cultures, then replaced with fresh medium at 3, 8, 16, and 24 h post-infection (hpi). The levels of porcine IL-18, IL-1β and TNF-α were detected using commercial enzyme-linked immunosorbent assay (ELISA) kits (XIpcc, Shanghai, China; Cusabio, Hangzhou, China) according to the manufacturer’s instructions. The amount of cytokines (ng/L; pg/mL) was calculated according to a standard curve generated from recombinant controls supplied in the kits.
Infected cells at 3, 8, 16, and 24 hpi were collected and total RNA was extracted by RNA Pre-Pure kit (Tiangen, Beijing, China) according to the manufacturer’s instructions. Then, total RNA was retro-transcribed into complementary DNA using PrimeScript RT reagent Kit (TaKaRa, Dalian, China). SYBR® Green (Vazyme Biotech, Nanjing, China) was used to quantify the PCR-amplification products and GADPH was used as a reference for quantitative RT-PCR (qPCR). Primers were used as follows: IL-6-F: 5′-TGGCTACTGCCTTCCCTACC, IL-6-R: 5′-CAGAGATTTTGCCGAGGATG; IL-8-F: 5′-GCTCCCAAGAATTTCTCAGTA, IL-8-R: 5′-CAGCAGCCTAGGGTTGCAAG; GADPH-F: 5′-TCGGAGTGAACGGATTTGGC, GADPH-R 5′-TGCCGTGGGTGGAATCATAC.
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4

Macrophage Response to rTSST-1 and ATP

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The macrophages were stimulated with rTSST-1 (1 μg·mL−1) + ATP (2 mM) for 3, 6 and 9 h. After stimulation, total RNA was extracted using the RNA pre-pure Kit (TIANGEN, Beijing, China) according to the manufacturer’s instructions. Then RNase-free DNase (TIANGEN) was added to RNA (0.2 µg) to remove the DNA, after which the 250R iScript advanced cDNA Synthesis kit (Bio-rad) was used to obtain cDNA. Quantitative real-time RT-PCR was performed on a Bio-rad CFX 96 (Hercules, CA, USA) using an soFast Eva Green Super-Mix (Bio-rad) according to the manufacturer’s instructions. The primers for quantitative real-time RT-PCR were as follows: IL-1β, 5′-GAAATGCCACCTTTTGACAGTG-3′ (forward) and 5′-TGGATGCTCTCATCAGGACAG-3′ (reverse); β-actin, 5′-TGGAATCCTGTGGCATCCATGAAAC-3′ (forward) and 5′-TAAAACGCAGCTCAGTAACAGTCCG-3′ (reverse). The relative expression was analyzed against the expression level of β-actin.
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5

Quantifying Inflammatory Cytokine Expression

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The neutrophils were stimulated with SEO (1 μg/mL) for 4 and 8 h. After stimulation, total RNA was extracted by using the RNA Pre-Pure kit (Tiangen, Beijing, China). Complementary DNA was then synthesized by PrimeScript RT reagent Kit (TaKaRa, Dalian, China) according to the manufacturer’s instructions. Quantitative real-time RT-PCR was carried out using SsoFast Eva Green Super-Mix (Bio-Rad, Hercules, CA) and performed on a Bio-Rad CFX 96 instrument. Primers were used as follows: IL-1β forward 5’-GAAATGCCACCTTTTGACAGTG and reverse 5’-TGG ATGCTCTCATCAGGACAG, β-actin forward 5’-TGGAATCCTGTGGCATCCATGAAAC and reverse 5’-TAAAACGCAGCTCAGTAACAGTCCG, NLRP3 forward 5’-CTTTCTGGACTCTGACCGGG and reverse 5’-CTCCCATTCTGGCTCTTCCC. The relative expression was analyzed against the expression level of β-actin.
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6

Intestinal RNA Extraction and qPCR Analysis

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RNA was extracted from 20 intestines of female adults using RNA pre pure kit (TIANGEN) and complementary DNA (cDNA) was synthesized with the M-MLV Reverse transcriptase (Promega). qPCR was performed using GoTaq qPCR Master Mix kit (Promega) on CFX96 Real-time PCR system(Bio-Rad). Experiments were performed in 3 biological independent replicates, each also contained 3 repeats. All the results are shown as Mean±SD of the biological replicates. Ribosomal gene RpL11 was used as normalization control. Primers used for qPCR are listed in S1 Text.
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