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10 protocols using d serine

1

Pharmacological modulation of glutamate signaling

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Reagents for ACSF and internal solutions, biocytin, NBQX, BaCl2, and picrotoxin were obtained from Sigma-Aldrich. CNQX, AP-5, DHK, DL-TBOA, TTX, ouabain, and D-serine were obtained from Tocris. L-glutamic acid from BioTrend and SR-101 from Invitrogen. NBQX, CNQX, and DL-TBOA were dissolved in DMSO. picrotoxin was dissolved in EtOH. AP-5, D-serine, TTX, ouabain, and DHK were dissolved in ddH2O.
In both patch-clamp and two-photon imaging experiments, following baseline recordings, drugs were applied in the external solution for at least 15 min prior to recordings. For the double pharmacology imaging experiments (Fig. 9) following baseline recordings, DHK (300 μM) was first applied and recordings were acquired 20 min later. Subsequently, DHK (300 μM) and DL-TBOA (68 μM) were applied for 20 min before recording. In a number of recordings in which we applied much higher doses of DL-TBOA (300 µM), we observed a change in baseline iGluSnFr fluorescence (similar to ref. 18 (link)), a reduced amplitude of the evoked responses and cellular swelling often accompanied by a lateral or Z drift. These experiments had to be excluded, which explains the low n value for this set of experiments (Supplementary Fig. 9).
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2

Pharmacological Agents for Synaptic Plasticity

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Pharmacological agents were purchased from: Sigma-Aldrich: Fluoroacetate, thapsigargin, BAPTA, bicuculline methbromide, Tricine, Zinc chloride, d-serine, and GDPβS; Tocris Bioscience: nimodipine, (+)-MK-801 maleate, d-AP5, NBQX, TTX citrate, PPDA, Ro 25-6981 maleate, MCPG, MPEP, LY341495, AM251, 2-AG, and FK506; and Abcam: UBP-141. Salts used for internal and external solutions were purchased from Sigma-Aldrich. Compounds were dissolved in H2O or Ringer solution with the exception of thapsigargin, nimodipine, PPDA, FK506, THL, AM251, and 2-AG, which were dissolved in DMSO. Vehicle (DMSO) at the concentrations used did not affect baseline EPSP amplitudes and had no other detectable effects on the neurons. When investigating the effect of pharmacological agents on plasticity, all drugs were included in the superfusion fluid or patch pipette from the start of the experiment until completion (from 0 to 50 min in a standard plasticity experiment), except for Fluoroacetate, which was applied from 60 min before the start of recording. When determining the effect of a pharmacological agent on baseline condition, a stable baseline of at least 10 min was first recorded and then the drug was bath applied by switching to a different perfusion line.
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3

Electrophysiological Recordings of Neuronal Activity

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Recording pipettes were filled with Cs+-based internal solution. Recordings were acquired at 20 kHz and low-pass filtered at 10 kHz. Access resistance (Ra) was monitored for the duration of each experiment, and data was excluded when Ra changed >25% or exceeded 25 MΩ. Except for MK-801 (1 mM in the recording pipette [61 (link)] during recordings of FFI; Tocris; Minneapolis, MN, USA), drugs were bath-applied at the following concentrations: MNI-Glutamate (MNI-Glu; 50 µm; Tocris); 2,3-Dioxo-6-nitro-1,2,3,4-tetrahydrobenzo[f]quinoxaline-7-sulfonamide (NBQX; 10 µM; Tocris); picrotoxin (100 µM; Tocris); and tetrodotoxin (TTX; 1 µM; Tocris); 4-Aminopyridine (4-AP; 100 µM; Sigma Aldrich; St. Louis, MO, USA); D-AP5 (50 µM; Tocris); D-serine (100 µM; Tocris; glutamate uncaging). Recording artificial cerebrospinal fluid (aCSF) contained 1.3 mM Mg2+ and 2.5 mM Ca2+. To facilitate Chronos-mediated neurotransmitter release with TTX and 4-AP [62 (link)] (PV+ interneuron EPSC recordings) aCSF was modified to contain 4 mM Ca2+ [63 (link)]. Ultraviolet (glutamate uncaging) and blue (optogenetic stimulation) illumination was generated using a CoolLED pE-300ultra (CoolLED; Andover, UK) and delivered to the slice through a ×40 objective.
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4

Hippocampal Slice Electrophysiology in Mice

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Male C57BL/6J wild type (WT), CYP46A1 knockout (KO) mice, and PV cre X Ai14 mice (ages: 10 – 16 weeks) were used according to protocols approved by the UCLA Chancellor’s Animal Research Committee. WT C57BL/6J or CYP46A1 KO (From Dr. David Russell, UT Southwestern) mice on a similar genetic background (JAX) were used in most studies. PV cre X Ai14 transgenic mice were generated by crossing PV-Cre (JAX Stock No: 008069) and Ai14 (JAX Stock No: 007914), both back-crossed for >10 generations on C57BL/6J background. Horizontal 350 μm hippocampal brain slices were prepared exactly as our previously reported (Ferando et al., 2016 (link)). For recording, brain slices were transferred to a submerged recording chamber at 34°C and perfused at 5 ml/min with a modified artificial cerebrospinal fluid (ACSFNMDA) containing (in mM): 126 NaCl, 10 D-glucose, 26 NaHCO3, 0.05 MgCl2, 2.5 KCl, 1.25 NaH2PO4, 2 CaCl2, 1.5 C3H3NaO3, 1 L-Glutamine; and 0.005 D-Serine, 0.005 Glycine, 0.01 6,7-dinitroquinoxaline-2,3-dione (DNQX, Tocris Biosciences, Minneapolis, MN, USA), 0.03 picrotoxin (PTX, Sigma-Aldrich, St. Louis, MO, USA) were added to block ionotropic glutamatergic and GABA-ergic transmission. All salts were purchased from Sigma-Aldrich.
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5

APPKI Mice for Alzheimer's Research

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Male and female APPKI mice carrying the humanized App gene with Arctic, Swedish, and Beyreuther/Iberian mutations (Saito et al., 2014 (link)) were supplied by the RIKEN Center for Brain Science. The SRRKO mice with a C57BL/6N background were generated as previously reported (Miya et al., 2008 (link)). Wild-type (WT) C57BL/6N mice were also included as a control group in experiments and were used to expand APPKI mice. SRR deleted APPKI (APPKI-SRRKO) mice were generated by crossing APPKI mice with SRRKO mice. Genotyping of APPKI mice was conducted by polymerase chain reaction (Saito et al., 2014 (link)), and genotyping of SRRKO mice was performed using Southern blot analysis as reported (Miya et al., 2008 (link)). All mutant mice were homozygous, and only male mice were used for experiments. Animals were group-housed and maintained in a temperature- and humidity-controlled environment with free access to chow and water. All animal care and experimental procedures were performed according to the Guidelines for the Care and Use of Laboratory Animals at the University of Toyama and approved by the Ethics Committee for Animal Experiments at the University of Toyama (Permission No. A2021 MED-33). For D-serine supplementation, 0.01 M D-serine (TOCRIS, cat no. 0226, Bristol, UK) was added to the drinking water from 9 to 12 months of age.
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6

Molecular Techniques for Cellular Studies

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All antibodies used in this study are listed in the Supplementary Table 1. Bicuculline, MG-132, LY294002 calpeptin, tetrodotoxin and glycine were obtained from Calbiochem (San Diego, CA). (+)-MK-801, CNQX, LY 367385, MPEP, L-689560, D-serine and picrotoxin were purchased from Tocris Biosciences (Ellisville, MO). 2-Bromopalmitate (2-BP) was purchased from Sigma-Aldrich (St. Louis, MO). PSD-95 shRNA lentiviral particles were purchased from Santa Cruz Biotechnology (Santa Cruz, CA).
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7

Neurophysiological Experiment Reagents

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Pharmacological agents were purchased from:

Sigma Aldrich—BAPTA, bicuculline methobromide, TTX, paraformaldehyde, tannic acid, tergitol, d-serine and all the salts used to prepare the internal and external solutions; Tocris Bioscience—(+)-MK-801 maleate, D-AP5, 8-CPT, and CPA. Bio-Rad—glutaraldehyde.

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8

Pharmacological Agents for Neuroscience Research

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Pharmacological agents were purchased from: Sigma Aldrich - BAPTA, d-serine, TTX, sodium fluoracetate, CPA, and all the salts used to prepare the internal and external solutions; Tocris Bioscience - (+)-MK-801 maleate, d-AP5, 8-CPT, cPTIO, l-glutamic acid, LY367385, LY341495, MPEP, 2-AG, AM251, L-NAME, DETA NONOate, Nimodipine, Thapsigargin, THL, GDPβS, Calphostin C, Bicuculline, and SCH50911. These compounds were dissolved in water except 8-CPT, 2-AG, AM251, THL, Nimodipine, and Thapsigargin that were dissolved in dimethyl sulphoxide.
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9

Reagents for Neurophysiology Experiments

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Reagents for artificial cerebrospinal fluid (ACSF) and internal solutions, biocytin, 6-nitro-7-sulfamoylbenzo[f]quinoxaline-2,3-dione (NBQX), and picrotoxin were obtained from Sigma-Aldrich. 6-cyano-7-nitroquinoxaline-2,3-dione (CNQX), AP-V, dl-TBOA, and d-serine were obtained from Tocris. NBQX, CNQX, and dl-TBOA were dissolved in dimethyl sulfoxide. Tetrodotoxin (TTX) was obtained from Abcam. NTG was obtained from Sigma-Aldrich. picrotoxin was dissolved in ethanol (EtOH). AP-V, d-serine, and TTX were dissolved in ddH2O.
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10

Electrophysiological Recordings and Pharmacology

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Picrotoxin and all chemicals used to prepare cutting, recording, and internal solutions were acquired from MilliporeSigma. All NMDAR antagonists (D-APV, MK-801, R-CPP), NMDAR agonist (D-serine), the group 2/3 mGluR agonist (DCG-IV), and MNI-glutamate for uncaging experiments were purchased from Tocris Bioscience. D-APV was also acquired from the NIMH Chemical Synthesis Drug Program. NBQX was purchased from Cayman Chemical Company. The noncompetitive AMPAR selective antagonist LY303070 was custom ordered from ABX Chemical Company. Alexa 594 morphological dye, Alexa 488, and the Ca2+ indicator Fluo-5F (Invitrogen) were purchased from ThermoFisher Scientific.
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