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Ltq orbitrap xl discovery

Manufactured by Thermo Fisher Scientific
Sourced in Germany

The LTQ-Orbitrap™ XL Discovery is a high-resolution, high-accuracy mass spectrometer that combines a linear ion trap (LTQ) with an Orbitrap mass analyzer. It provides precise mass measurements and high-resolution capabilities for molecular analysis.

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5 protocols using ltq orbitrap xl discovery

1

Comprehensive Analytical Workflow for Lipid Profiling

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NMR spectra were recorded on ARX-400 Advance spectrometer (Bruker Corporation). FTIR spectra were obtained on a Nicolet iS10 infrared spectrometer (Thermo Scientific, Madison, WI) in reflection geometry using a single bounce diamond attenuated total reflectance (ATR) accessory. LPA were separated on a Luna C-8 (50 × 2 mm, 3 μm) column connected to a guard cartridge with 2.0 to 3.0 mm internal diameters (Phenomenex, Torrance, CA) in an Accela UHPLC system (Thermo Scientific, Madison, WI). MS data were collected via an LTQ-Orbitrap XL Discovery instrument (Thermo Scientific, Madison, WI), equipped with an ESI ion max source. All chemicals were purchased from Sigma-Aldrich (St. Louis, MO) and used without further purification except when specifically mentioned. All phospholipids were purchased from Avanti Polar Lipids (Alabaster, AL). Ethylene glycol dimethacrylate (EGDMA) was purified by vacuum distillation. Human plasma was collected by Lampire Biological Laboratories Inc., from female donors, processed to obtain platelet-free plasma, and frozen at −80 °C. Empty SPE tubes and frits were purchased from Sigma-Aldrich (St. Louis, MO). HPLC grade MeOH, CHCl3 and water were purchased from Honeywell International Inc.
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2

Proteomic Analysis by LTQ Orbitrap MS

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Mass spectrometry analysis was performed on a linear trap quadropole (LTQ) Orbitrap XL Discovery (Thermo Fisher Scientific) equipped with a nanoelectrospray ion source (Thermo) coupled to a Dionex Ultimate 3000 nanoflow LC system (Thermo Fisher Scientific). LC-MS/MS was performed essentially as described131 (link), using a 160 minute multistep gradient of solvent A (5% ACN and 0.1% formic acid in milliQ-water) and B (80% ACN and 0.1% formic acid in milliQ-water).
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3

Direct Infusion Mass Spectrometry Analysis

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Peaks from RP-HPLC were analyzed in a LTQ Orbitrap XL Discovery equipped with a ESI source (Thermo Fisher Scientific) in positive ion mode. For the direct-infusion experiments, a flow of 15 μL/min was provided by a syringe pump using a 250 μL syringe (Hamilton, Reno, NV, USA). The following settings were applied: capillary voltage of −4.0 kV, mass range of m/z 125 to 2,000 and capillary temperature of 260 °C. Calibration was performed with standard calibration mixture containing caffeine (m/z 195), MRFA peptide (m/z 524) and Ultramark 1600 (m/z 1,022–1,922).
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4

Comprehensive LC-MS/MS Protein Analysis

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Liquid chromatography was performed using the Dionex UltiMate™ Rapid Separation Binary Pump (P/N HPG-3200RS), coupled to a thermostatted rapid separation well plate autosampler (P/N WPS-3000TRS), thermostatted column oven (P/N TCC-3000RS), and variable wavelength detector (P/N VWD-3400RS) manufactured by Thermo Scientific (Waltham, MA). Mass spectrometry analyses were performed using the LTQ Orbitrap Elite (for tryptic digests generated for time/temperature optimization) or the LTQ Orbitrap Discovery XL (for subunit analysis, digests generated for trypsin species optimization and for final PS 8670/RM 8671 peptide maps) with a heated electrospray ionization source probe (HESI-II) manufactured by Thermo Scientific, Waltham, MA. The instruments were controlled using Xcalibur 2.1.0 SP1 Build 1160 (Thermo Scientific, Waltham, MA) and Dionex Chromatography MS Link (DCMS Link) for Xcalibur 2.14 Build 3818 (Thermo Scientific, Waltham, MA).
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5

High-Precision LC-HRMS Analysis of Analytes

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A hybrid LTQ Orbitrap Discovery XL mass spectrometer (Thermo Scientific, Bremen, Germany), coupled to an Accela HPLC system (Thermo Scientific, Bremen, Germany) was used for the analyses. The selected reaction monitoring (SRM) methodology has been employed using the transitions referred to Table S1. An isolation width of 2 amu was used for the precursor ion, whereas the mass accuracy for the product ions has been set to 5x10 -4 amu. An RP-C18 Hypersil Gold column (50 x 2.1 mm, 1.9 μm; Supelco, Darmstadt, Germany) was used for the separation of the analyte from the plasma substances preceded by an in-line filter. The chromatographic program used is tabulated in Table S2. A representative LC-HRMS chromatogram is shown in Supplementary Figure 4.
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