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Phosphate buffer saline (pbs)

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Phosphate buffer saline (PBS) is a widely used buffer solution in biological and laboratory applications. It is a balanced salt solution that maintains a stable pH and ionic concentration, providing a suitable environment for various experiments and procedures. PBS is commonly used as a diluent, washing agent, and medium for maintaining the viability of cells and tissues.

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361 protocols using phosphate buffer saline (pbs)

1

Synthesis of Gold Nanoparticles

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First, 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC, powder) was purchased from Avanti Polar Lipids (Alabaster, AL, USA). Tetrachloroauric (III) acid (HAuCl4·3H2O, 99.9%), trisodium citrate (Na3C6H5O7, meets USP testing specifications), L-cysteine hydrochloride (≥98%, C3H7NO2S·HCl), 5,5′-dithiobis(2-nitrobenzoic acid) (≥98%, bioreagent, suitable for determination of sulfhydryl groups), cholesterol (≥99%, Sigma grade), TritonTM X-100 (laboratory grade), phospholipase A2 (from porcine pancreas), cetyltrimethylammonium bromide (CTAB), methanol, chloroform, phosphate buffer saline (pH 7), phosphate buffer saline (pH 5.2), sodium acetate buffer (pH 5.5), citrate phosphate buffer (pH 5.0), hydrochloric acid (36%, HCl), and HPLC grade water were purchased from Sigma Chemical Co. (Saint Louis, MO, USA) All reagents were analytically pure. Glassware were cleaned with aqua regia (HCl:HNO3 = 3:1 vol/vol) and subsequently rinsed thoroughly with deionized water more than three times before use.
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2

Fabrication of Gold Nanoparticle-Based Bioassays

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Tetraethylorthosilicate
(TEOS, 98%) was purchased
from Acros Organics (NJ, USA). Sodium citrate (Na3Ct),
gold(III) chloride trihydrate (HAuCl4·3H2O, 99.9+%), hydroxylamine hydrochloride (98%, ACS grade), sodium
borohydride (NaBH4, >98%), Na3PO4·12H2O, sucrose, Tween 20, Triton X-100, phosphate
buffer saline (PBS, pH 7.4, 0.01 M), phosphate buffer saline with
0.05% Tween 20 (PBST), and bovine serum albumin (BSA) were purchased
from Sigma-Aldrich, Inc. (St. Louis, MO, USA). Ammonium hydroxide
(NH4OH, 28.0%–30.0%), potassium carbonate (K2CO3·1.5 H2O, ACS grade), and ethanol
(95%) were obtained from Fisher Scientific Co. (Pittsburgh, PA, USA).
Polyvinylpyrrolidone molecule (PVP; average molecular weight Mn = 40 000) and 1-pentanol (99+%, ACS
grade) were purchased from Alfa Aesar (Ward Hill, MA, USA). Rabbit
IgG, goat antirabbit IgG (Ab1), and mouse antigoat IgG
(Ab2) were obtained from Thermo Scientific (Rockford, IL,
USA). Glass fibers (GFCP000800), cellulose-fiber sample pads (CFSP001700),
laminated cards (HF000MC100), and nitrocellulose membranes (HFB18004)
were provided by Millipore (Billerica, MA, USA). All chemicals were
analytical reagent grade unless specified. All buffer solutions were
prepared using ultrapure water (>18 MΩ cm) from a Millipore
Milli-Q water purification system.
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3

OVA-Induced Food Allergy in Mice

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The animal study protocol (VD2153.2) was approved by the Service Vétérinaire du Canton de Vaud, Switzerland (Figure 1A). The C57BL/6J CRL mice strain was chosen because it has been successfully used in OVA-induced food allergy and oral tolerance models [32 (link),33 (link),34 (link),35 (link),36 (link)]. Briefly, 5-week-old C57BL/6J CRL female mice (Charles River Laboratories, Lyon, France) were sensitized using two subcutaneous injections of 100 µg (Sigma) and 1 mg aluminum hydroxide (Sigma) in 50 µL of phosphate buffer saline (PBS; Sigma) on two separate sites (neck and back) at days 13 and 26. Oral challenge was performed using a gavage with 50 mg OVA in 250 µL of PBS at day 33. At day 35, mice were anaesthetized using isoflurane and euthanized after collecting blood from the abdominal aorta. Axillary/brachial lymph nodes were harvested for further analyses. Mice had free access to food pellets (Kliba 3437, Kliba Nafag, Kaiseraugst, Switzerland) containing wheat, barley, soy, corn, and amino acids as a source of protein. No egg protein was present in the diet.
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4

PBMC Isolation and Preservation for Biomarker Discovery

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PBMC samples were collected one day before surgery (day -1). Clinical data was collected on day -1 and day 8 postoperatively. We chose, based on our successful Allomap biomarker test development experience[40 (link)–43 (link)], to focus on the mixed PBMC population.
Eight ml of blood was drawn into a CPT tube (Becton Dickinson, Franklin Lakes, NJ). Peripheral Blood Mononuclear cells (PBMC) from each sample were purified within 2h of phlebotomy. The collected blood was mixed and centrifuged at room temperature (22°C) for 20min at 3000RPM. Two ml of plasma was separated without disturbing the cell layer into an eppendorf tube (Sigma-Aldrich, St. Louis, MO) and stored at -80°C for future experiments. The cell layer was collected, transferred to 15ml conical tubes and re-suspended in cold Phosphate Buffer Saline (PBS) (Sigma-Aldrich, St. Louis, MO) and centrifuged for 20min at 1135RPM at 4°C. The supernatant was aspirated and discharged. The cell pellet was re-suspended in cold PBS, transferred into an eppendorf tube and centrifuged for 20min at 5.6 RPM at 4°C. The supernatant was discharged. The pellet was re-suspended in 0.5 ml RNA Protect Cell Reagent (Qiagen, Valencia, CA) and frozen at -80°C.
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5

Isolation and Expansion of Sheep Iliac Crest MSCs

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The MSCs harvested from sheep iliac crest were isolated according to their adherence to cell culture plastic. Bone marrow aspirates were first washed by addition of an equal volume of phosphate buffer saline (PBS; Sigma-Aldrich, France) and centrifuged at 220×g for 5 min. The cell pellets were suspended in Dulbecco’s Modified Eagle Medium (DMEM; Lonza, Germany) containing 10% heat-inactivated fetal bovine serum (Gibco, Thermo Fisher Scientific, France), 50 U/mL of penicillin (Lonza, Germany), 50 μg/mL of streptomycin (Lonza, Germany), 2.5 μg/mL Fungizone (Lonza, Germany), and seeded in a T75 culture flasks, under standard cell culture conditions. The following day, medium was discarded and attached cells were gently washed up several times with PBS to remove non-adherent cells. Flasks were then incubated for several days in DMEM, replaced every 72 h to promote emergence of colonies from adherent cells. When cells finally reached sub-confluence, they were sub-cultured until passage 2, when they were expanded for stemness characterization.
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6

EAE Induction and In Vitro Assays

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RPMI-1640 medium, penicillin/streptomycin, and fetal bovine serum (FBS) were purchased from Gibco (Invitrogen, Germany). Hooke kit for EAE induction (myelin oligodendrocyte glycoprotein35-55 (MOG35-55) (20 (link)) combined with complete Freund’s adjuvant (CFA) emulsion (21 (link)) and pertussis toxin (PTX):5X) and MOG35-55 for in vitro stimulation of cells were purchased from Hooke laboratories (EK-0115, Lawrence, MA, USA). Reagents required for histopathological analyses including paraffin, xylol, alcohol, phosphate buffer saline (PBS) and Luxol fast blue were obtained from Sigma (Sigma-Aldrich, Germany). IL-6 ELISA kit and cell proliferation ELISA BrdU kit were obtained from e-Bioscience and Roche, respectively. MS14, an Iranian herbal-marine compound classified as equivalent to food with no observable adverse effect level (NOAEL), was donated by deceased Dr. Ahmadi.
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7

Apoptosis Assay with Hoechst 33258

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Hoechst 33258 dye was from Thermo Fisher Scientific (Waltham, MA, USA). Annexin V-FITC/PI apoptosis kit was purchased from Invitrogen (Carlsbad, CA, USA). Phosphate buffer saline (PBS) and 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) were obtained from Sigma (St Louis, MO, USA). SP600125 was from Selleck Chemicals (Houston, Texas, USA). All antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA).
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8

Recombinant Metal-Free Apo-SOD1 Protein Production

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All experiments were performed using recombinant, metal-free apo-SOD1 protein expressed and purified from BL21-Gold(DE3) PLysS E. coli cells (Strategene, Inc., Cedar Creek, TX, USA), as previously described 24 (link). The two free cysteines, Cys6 and Cys111, were mutated to Ala and Ser, respectively, to avoid intermolecular disulfide scrambling; the glycine-to-alanine substitution (G93A) was introduced into this pseudo WT background18 (link). L-Histidine, L-methionine, 30% hydrogen peroxide, leucine enkephalin acetate hydrate, catalase, trifluoroethanol (TFE), urea, dithiothreitol (DTT), iodoacetamide (IAM), ammonium acetate, formic acid (FA), trifluoroacetic acid (TFA), HPLC-grade solvents, and phosphate buffer saline (PBS) were purchased from Sigma-Aldrich (St. Louis, MO). Sequencing-grade trypsin was purchased from Promega (Madison, WI).
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9

Microbial Culture Media Preparation

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Glucose, sodium hydroxide (NaOH), and phosphate buffer saline (PBS) were purchased from Sigma Aldrich (St Louis, MO, United States). Nutrient agar and bacteriological peptone, citric acid, and yeast extract were supplied by the Oxoid Ltd., while dextrose by Daejung, South Korea. Curcumin and sodium dihydrogen phosphate (NaH2PO4) purchased from Merck & Company, Inc. (Darmstadt, Germany).
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10

Synthesis of Metal-Oxide Nanostructures

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Aluminum foils (thickness 0.5 mm, purity 99.999%) were obtained through Goodfellow Ltd. (Cambridge, UK), ethanol absolute (C2H5OH, 99.0%, ACS reagent), whereas acetone ((CH3)2CO, ACS Basic) perchloric acid (HClO4, 70% ACS), oxalic acid (H2C2O4, C.N. 144-62-7, Mw = 90.03 g/mol), (3-aminopropyl trimethoxysilane, C.N. 919-30-2, Mw = 221.37 g/mol), hydrochloric acid (HCl, 37%, C.N.7647-01-0), copper chloride (CuCl2, C.N.-10125-13-0, >99%), Rhodamine 6G (C28H31N2O3Cl, C.N. 989-38-8, Mw = 479.01 g/mol), Polystyrene sulfonate (C8H8O3S, C.N.25704-18-1, Mw ≈ 70,000), Polyallylamine hydrochloride (CH2CH(CH2NH2.HCl)n, (C.N.71550-12-4, Mw ≈ 50,000), calcium chloride (CaCl2, C.N. 10043-52-4, ≥93% anhydrous), phosphate buffer saline (PBS, bioperformance, pH-7.4) were purchased from Sigma Aldrich (Munich, Germany). Double deionized water (DI) (18.6 MΩ, PURELAB Option Q) was used for all the solutions unless otherwise specified.
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