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3 protocols using anti craf antibody

1

Generation and Characterization of RAF1 Fusion Constructs

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SRGAP3-RAF1 and QKI-RAF1 constructs were synthesized as Gateway compatible entry clones. Full-length RAF1, QKI and SRGAP3 were purchased as gateway entry clones from PlasmID/Dana-Farber/Harvard Cancer Center DNA Resource Core. Sub-cloning was done to integrate SRGAP3-RAF1, QKI-RAF1, full-length QKI, RAF1 and SRGAP3 into Gateway-compatible N-MYC-tagged pMXs-Puro Retroviral Vector (Cell Biolabs). NIH3T3 and early-passage PMAs were transduced using infection protocol previously described18 (link). Gateway destination vectors with either an N-terminal MYC or FLAG tag (Invitrogen) were generated for all constructs. Anti-MYC antibody (Invitrogen R951-25, 1:5000) and anti-FLAG antibody (Sigma A8592, 1:10,000) were used to detect tagged-proteins along with anti-CRAF antibody (Cell Signaling #9422).
QKI-RAF1 dimerization mutants were generated by PCR-based site-directed mutagenesis of MYC- and FLAG-tagged constructs. RAFR401H dimerization mutants35 (link), 36 (link) in QKI-RAF1 were generated using primers: Forward CGCAAAACACACCATGTGAACA and Reverse CAGAACAGCCACCTCATTCCT. QKIE48G dimerization mutants31 (link) in QKI-RAF1 were generated using primers: Forward CTGGACGAAGGAATTAGCAGAG and Reverse CAGCCGCTCGAGGTGGTT.
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2

Western Blot Antibody Validation

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The following antibodies were purchased from Cell Signaling Technologies: anti-Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (E10) Mouse mAb #9106, anti-histone H3 (D1H2) XP Rabbit mAb #4499, anti-c-Raf Antibody #9422, anti-phospho-LRP6 (Ser1490) Antibody #2568, anti-GAPDH (D4C6R) Mouse mAb #97166. Anti-Beta-catenin mouse mAb was purchased from BD Transduction Laboratories (#610153) and anti-GAPDH rabbit antibody was purchased from Abcam (ab9485). The following fluorescent secondary antibodies were purchased from Fisher Scientific: IRDye 800CW Goat anti-Mouse IgG (926–32210) and IRDye 680LT Goat anti-Rabbit IgG (926-68021).
Recombinant human Wnt3A was purchased from Fisher Scientific (5036WN), and recombinant human EGF was purchased from Sigma (E9644). CHIR99021 was purchased from Sigma (SML1046). Halt Protease and Phosphatase Inhibitor Cocktail (100X) was purchased from Fisher Scientific (78440).
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3

Western Blot Analysis of MAPK Signaling Pathway

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Cells were lysed with SDS lysis buffer (0.1 M Tris‐HCl at pH 8.0, 10% glycerol, 1% SDS) and immediately boiled for 10 minutes to obtain clear lysates. Protein concentrations were measured using the BCA method (Pierce). Lysates containing equal amounts of proteins were separated by SDS‐PAGE and transferred to PVDF membranes (Merck) for Western blot analysis using the appropriate antibodies. Immunoreactive proteins were visualized using the Immobilon Western chemiluminescent HRP substrate (Merck) or Clarity Western ECL substrate (Bio‐Rad); light emission intensity was quantified using an LAS‐3000 lumino‐image analyzer equipped with Image Gauge v2.3 software. The antibodies used in this study were: anti‐BRAF antibody (14814; Cell Signaling Technology), anti‐CRAF antibody (53745; Cell Signaling Technology), anti‐MEK1/2 antibody (8727; Cell Signaling Technology), anti‐phospho‐MEK1/2 (Ser217/221) antibody (9121; Cell Signaling Technology), anti‐p44/42 MAPK (ERK1/2) antibody (4695; Cell Signaling Technology), anti‐phospho‐p44/42 MAPK (ERK1/2) (Thr202/Tyr204) antibody (4377; Cell Signaling Technology), anti‐RAS antibody (8955; Cell Signaling Technology), anti‐CRBN antibody (71810; Cell Signaling Technology), and anti‐β‐actin antibody (A5316; Merck).
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