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12 protocols using uplc hss t3

1

Targeted Metabolite Analysis by UPLC-MS/MS

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Column: Waters UPLC HSS T3. Mobile phase: methanol, water + 0.1% formic acid. Flow rate: 0.3 ml/min. Sample injection volume: 10 µl. The mass spectrometer was a quadrupole orbital ion trap mass spectrometer (containing a thermospray ion source, Q Active ™) (Table 2).

Elution gradient table

Time (min)Mobile phase
A (v%)B (v%)
0298
1.0298
41.01000
50.01000
50.1298
52.0298
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2

UPLC Gradient Elution for Compound Analysis

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Chromatographic separation was conducted on a WATERS ACQUITY UPLC HSS T3 (1.7 μm, 2.1 mm × 100 mm) at 40°C. The mobile phase contained 0.1% formic acid aqueous solution A) and acetonitrile B), at a flow rate of 0.3 ml min-1. The gradient elution program was applied as follows: 2% B–11% B (0–10 min); 11% B–20% B (10–15 min); 20% B–30% B (15–25 min); 30% B–40% B (25–28 min); 40% B–98% B (28–47 min); 98% B (47–51 min); 98%–2% B (51–51.5 min); 2%–2% B (51.5–55 min). The injection volume was 2 μL.
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3

Quantification of Ferulic Acid via HRMS

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Verification of ferulic acid in the samples was performed on an Agilent 6550 high-resolution mass spectrometry (HRMS) coupled to an Agilent Infinity 1290 II UHPLC system. Metabolites were separated on an UPLC HSS T3 (1.8 μm, 2.1 × 100 mm, Waters) column with a water-MeOH gradient solvent system containing 0.04% formic acid. The gradient started at 5% MeOH with formic acid (MPB) and ramped to 100% MPB over 6 min and held for 4.50 min at 100% MPB. Column temperature was set to 45 °C and the flow at 0.4 ml/min. Mass spectra were acquired using a Jetstream ESI source in negative ionization mode scanning from 50 to 1700 m/z at 1.67 spectra/s. The capillary voltage was set at 3500 V. The source parameters were as follows: gas temperature at 175 °C, drying gas flow at 12 l/min, nebulizer at 45 psig, sheath gas temperature at 375 °C, and flow at 11 l/min and fragmentor at 300 V. Ferulic acid was identified based on its accurate mass (193.4546 m/z) and retention time (2.8 min). MS/MS data was acquired for the selected precursor at 237.3767 m/z identified in reactions containing DmCE1A and for a standard of 3,4,5-trimethoxycinnamic acid (molecular weight 238.24 g/mol) by using three different collision energies (10, 20 and 40 eV) with a duty cycle of 2.032 s/cycle. MS data was acquired with MassHunter Workstation Data Acquisition.
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4

LC-MS/MS Metabolite Profiling Protocol

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Samples were injected into an ExionLC
System interfaced with a QTRAP 6500+ (Sciex, USA). The temperatures
of the autosampler were maintained at 10 °C. The injection volume
of samples was 5 μL. Eluents consisted of 10 mM ammonium formate
and 0.1% formic acid in 6:4 acetonitrile/water (eluent A) and 1:9
acetonitrile/methanol contained 10 mM ammonium formate and 0.1% formic
acid (eluent B). The flow rate was set at 0.35 mL/min. A 20 min elution
gradient with an UPLC HSS T3 (1.8 μm, 2.1 × 100 mm, Waters)
column was carried out as follows: During the first 1.5 min, the eluent
composition was set at 0% B, which was linearly increased to 55% B
at 5 min, then 60% B at 10 min, 70% B at 13 min, and 90% B at 15 min;
in the next 1 min, B was changed to 100% and held for 2 min. Mass
data were acquired in the positive/negative ion mode using the time-scheduled
multiple reaction monitoring (MRM) method, respectively. The source
conditions were as follows: curtain gas was 40 psi, collision gas
was medium, ion spray voltage was −4500 V/+5500 V, and gas
1 and gas 2 were 50 and 55 psi, respectively.
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5

UPLC-ESI-MS/MS Analysis of Phenolic Metabolites

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For the purpose of qualitatively and quantitatively detecting target metabolites, UPLC-ESI-MS/MS analysis was employed.
An ultrahigh-performance liquid chromatograph from AB Company (Framingham, Massachusetts, USA) was used as the chromatographic system. To separate phenolic substances, a Waters UPLC HSS T3 (100 × 2.1 mm, 1.8 m) liquid chromatographic column was utilized (Milford, Massachusetts, USA). The following chromatographic conditions were used: injection volume of 5 μL, flow rate of 0.35 mL/min, mobile phase comprising A (0.1% formic acid water solution) and B (acetonitrile). The gradient elution procedure was set as follows: 0 min A/B (95:5, V/V), 0.8 min A/B (95:5, V/V), 3 min A/B (75:25, V/V), 12 min A/B (56.2:43.8, V/V), 13 min A/B (1:99, V/V), 14.4 min A/B (1:99, V/V), 14.41 min A/B (95:5, V/V), and 15 min A/B (95:5, V/V).
For the mass spectrum conditions, the following settings were employed: Positive ion mode with CUR at 35 psi, EP at 10, IS at 5500, CXP at 10, TEM at 500 ℃, Gas1 at 60 psi, and Gas2 at 50 psi. Negative ion mode with CUR at 35 psi, EP at −10, IS at −4500, CXP at −20, TEM at 500 ℃, Gas1 at 60 psi, and Gas2 at 50 psi. The column temperature was maintained at 40 ℃.
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6

Ultra-high-performance LC-QTOF analysis of metabolites

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Data were collected using an ultra-high-performance liquid phase (Waters Acquity UPLCTM I-class system, Waters Corp, Milford, MA, USA) coupled with a high-resolution time-of-flight mass spectrometer (Waters Xevo G2 QTof, Waters Corp., Milford, MA, USA). Chromatography was performed using Waters UPLC HSS T3 at 40°C. The data were processed using Waters MassLynx 4.1. The mobile phase was water (A) and acetonitrile (B) containing 0.1% formic acid, the flow rate was 0.3 mL/min, and the elution conditions were as follows: 0–2 min, 0–5% B; 2–10 min, 5%–15% B; 10–15 min, 15%–25% B; 15–18 min, 25%–50% B; 18–23 min, 50%–100% B; 23–25 min, 100%–2% B; and 25–30 min, 2% B. The injection volume was 2 μL. The mass spectra were obtained in Fast DDA and positive ion mode, with an ESI ion source, and the following settings were used: electrospray ionization ion scan range: 50–2000 m/z; capillary voltage: 3.0 kV; ion source temperature: 100°C; desolvation gas (N2) temperature: 500°C; desolvation gas flow rate: 1000 L/h; cone gas flow rate (N2): 100 L/h; and collision gas: argon.
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7

LC-MS Metabolomics Profiling Protocol

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ACQUITY UPLC HSS T3 (2.1 × 100 mm 1.8 m columns) was used for liquid chromatography–mass spectrometry (LC-MS) (Waters, UPLC; Thermo, Q Exactive). The following chromatographic separation conditions were used: column temperature, 40°C; flow rate, 0.30 mL/min; mobile phase A, water + 0.05 percent formic acid; mobile phase B, acetonitrile; injection volume, 2 μL; automatic injector temperature, 4°C. The MS parameters are as follow: ESI+: spray voltage, 3.0 (ESI+) or 3.2 (ESI-) kV; S-Lens RF level, 30% (ESI+) or 60% (ESI-); heater temperature, 300 °C; sheath gas flow rate, 45 arb; auxiliary gas flow rate, 15 arb; sweep gas flow rate, 1arb; capillary temperature, 350°C. Scan duration is 100 ms, interscan time is 50 ms, and the scan range is 70-1050 m/z. Data was analyzed using Compound Discoverer 3.1 software (Thermo Fisher Scientific,USA), normalized, and converted into a two-dimensional matrix using Excel 2010 software, containing retention time, compound molecular weight, observations (samples), and peak intensity (39 (link), 40 (link)).
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8

Untargeted Metabolomics of Mouse Feces

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Untargeted metabolomics was used to analyze the metabolome in mouse feces. One-hundred microliter feces was mixed with 300 μl methanol and 20 μl internal standard. Samples were extracted with ultrasound for 5 min in an ice bath and then stood at −20°C for 2 h. After centrifuging at 13,000 rpm at 4°C for 15 min, 200 μl supernatant was taken in a 2 ml vial for LC-MS analysis. The instrument platform for LC-MS analysis consisted of Agilent 1290 ULTRA performance liquid chromatography in tandem with Thermo Fisher Scientific Q Exactive Orbitrap High-resolution mass spectrometer. The chromatographic column was UPLC HSS T3 (1.7 μm 2.1 × 100 mm, Waters). Compound Discover (Version 2.0, Thermo) and OSI-SMMS (Version 1.0, Dalian Dasuo Information Technology Co., LTD.) were used in conjunction with mzCloud database and self-built database for substance identification.
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9

UPLC-MS/MS Analytical Protocol

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Chromatography was performed on 1290 Infinity Binary LC System from Agilent together with Waters Acquity UPLC HSST3 1.8μm 2.1 × 100 mm column in connection with a Water Acquity UPLC HSS T3 1.8μm VanGuard Pre-column. Mass spectrometry was performed using Agilent Technologies 6530 Accurate-Mass Q-T of with a dual ASJ ESI ion source.
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10

Analytical Techniques for Areca Nut Compounds

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Arecoline was quantified using high-performance liquid chromatography (HPLC), as described previously, with some modifications (25 (link)). For HPLC, we used a Waters UPLC HSS T3 chromatographic column (100 mm × 2.1 mm × 1.8 μm), a 215-nm wavelength, a column temperature of 30°C, a flow rate of 0.15 mL/min, a sample volume of 10 μL, and a mobile phase comprising 0.1% phosphoric acid-acetonitrile in a 65:35 ratio. Furthermore, areca nut polyphenols were detected using enzyme-linked immunosorbent assay (ELISA). The ELISA kit was purchased from Suzhou Michy Biology Technology Co., Ltd. The HPLC analysis and ELISA showed that the extracted ANE contained 8.75 μg/g and 8.86 mg/g of arecoline and phenol, respectively. The secondary metabolites in ANE were detected using liquid chromatography-mass spectrometry (LC–MS) (Supplementary Table S1).
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