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14 protocols using human ab serum

1

Melan-A-specific CD8+ T cell activation

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CD8pos T cells were plated in triplicate in a 96 well round bottom plate at 105 cells per well in 100 µL IMDM containing 1% heat-inactivated human AB serum [Innovative Research, Novi, MI, USA], 100 U/mL penicillin, 100 µg/mL streptomycin, 2 mM L-Glutamine and non-essential amino acids [Sigma Aldrich]. moDCs were electroporated with Melan-A mRNA to generate so called DC-MEL [19 (link)]. DC-MEL were added to the T cells at an effector:stimulator ratio of 10:1 in 100 µL culture medium. Co-cultures with DC-MEL were performed for 7 days at 37 °C, 5% CO2 in the presence of 10 µg/200 µL blocking anti-PD-L1 mAbs or sdAb K2, or isotype matched control mAbs or sdAb R3B23. T cells were restimulated on day 7. Analysis of the activation of Melan-A-specific T cells was performed 7 days after the last stimulation. The number of viable, Melan-A/HLA-A2 dextramerpos CD8pos T cells was determined by flow cytometry. The production of interferon γ [IFN-γ] was evaluated with ELISA [Thermo Scientific, Brussels, Belgium] according to the manufacturer’s instructions. The production of interleukin [IL]-2, IL-4 and tumor necrosis factor-α [TNF-α] was determined using BioPlex Pro Human Cytokines [Biorad, Temse, Belgium] according to the manufacturer’s instructions.
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2

Automated CAR T Cell Manufacturing with CliniMACS Prodigy

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CAR T cell manufacture was automated with the use of the CliniMACS Prodigy® device using the TCT software program and TS520 tubing set (Miltenyi Biotec, Bergisch Gladbach, Germany). The instrument setup and technical protocol were described by Zhu et al.(59 (link)). The clinical-grade reagents applied in this process were CliniMACS Buffer, TexMACS Media, CliniMACS CD4 reagent, CliniMACS CD8 reagent, TransAct, and the cytokines IL-7 and IL-15 (Miltenyi Biotec, Bergisch Gladbach, Germany). Peripheral blood apheresis products were loaded into the machine and CD4 and CD8 T cells were isolated using CliniMACS CD4 reagent and CliniMACS CD8 reagent according to the manufacturer’s instructions. The isolated T cells were then stimulated with IL-7 and IL-15 (Miltenyi Biotec, Bergisch Gladbach, Germany) at a concentration of 25μg/2L bag of TexMACS Media with 3% human AB serum (Innovative Research, Novi, MI, USA). human AB serum was removed after the 6th day of culture. The viability, purity, and potency of the products were confirmed as previously described(23 (link)). This process was performed at the Cellular Therapy Lab of University Hospitals Cleveland Medical Center Seidman Cancer Center/Case Western Reserve University Center for Regenerative Medicine.
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3

Manufacture of Clinical-Grade CAR-T Cells

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Clinical-grade reagents used to manufacture the CAR-T cells included: CliniMACS Buffer, TexMACS Media, CliniMACS CD4 reagent, CliniMACS CD8 reagent, TransAct, and the cytokines IL-7 and IL-15 (Miltenyi Biotec, Bergisch Gladbach, Germany). Reagents were utilized according to manufacturer’s instructions. One 25 μg vial each of IL-7 and IL-15 was added per 2L bag of media. A 25% stock solution of Human Serum Albumin (HSA) was used to supplement the CliniMACS Buffer to a concentration of 0.5%. Human AB serum was used to supplement the TexMACS Media to a concentration of 3% and was from Innovative Research (Novi, MI, United States). TexMACS Media was supplemented with Human AB serum for 6 days of the cell culture and then replaced with media without Human AB serum for the duration of the culture.
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4

Serological Assays for SARS-CoV-2 Antibodies

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RBD IgG ELISAs were performed using a previously published protocol (47 (link)), except that plasma was diluted to a final concentration of 1:20. Human AB serum (Innovative Research) purchased before the COVID-19 pandemic was used as a negative control, and a commercially available rabbit anti-SARS-CoV-2 spike monoclonal antibody (catalog number 40150-R0907, Sino Biological) and donkey anti-rabbit IgG secondary antibody (Jackson ImmunoResearch) were used as a positive control. The plates were read in a VersaMax tunable microplate reader (Molecular Devices). The average of the negative control readings plus 3 times the standard deviation was used as a cut-off for positivity.
N IgG ELISAs were performed using the Elecsys Anti-SARS-CoV-2 immunoassay (Roche) on a Cobas e411 analyzer (Roche) per the manufacturer’s instructions (48 (link)). A COI value >1 was considered positive.
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5

Generating CMV-Specific T Cell Lines and Clones

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CMV-specific T cell line (HD-2) and T cell clones (A1-8 and A1-9) specific for CMV pp65 protein were generated from a single HLA-A*0201+ healthy control. CMV-specific T cells were stained with HLA-PE-conjugated A*0201 CMVNLVPMVATV Dextramer (Immunex, Copenhagen, Denmark) for 30 min at room temperature. HLA-A*0201-CMV-CTL were then sorted using a FACS Aria flow cytometer.
Sorted CMV-CTL from HD-2 cell line were then clonally selected using limiting dilution in T cell medium containing Serum-free medium (Cell-Genix, Freiburg, Germany), with 10% human AB serum (Innovative Research, MI) supplemented with IL-2 (1000 IU/ml), IL-15 (10ng/ml), IL-21 (10ng/ml), (Prospec, Ness-Ziona, Israel), penicillin (100IU/ml), streptomycin (100μg/ml) (Life Technologies, Carlsbad, CA), and amphotericin B (2.5mg/L) (Sigma-Aldrich, St Louis, MO) and seeded with anti-CD3 (OKT3) (Biolegend, CA, USA) and addition of γ-irradiated allogeneic feeder cells at a 5:1 E:T ratio. After 14 days, the clonal selection was repeated. Expanded T cell clones were transferred into larger vessels when required where they were subsequently expanded in T cell culture medium and maintained by biweekly stimulation with OKT3 and irradiated allogenic feeder cells.
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6

Characterizing Brain Cancer Patients

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The regional ethical review board (Regionala etikprövningsnämnden) at Karolinska Institutet, Stockholm, Sweden, approved this study (diary number: 2013/576-31). Patients with brain cancer (n = 286) registered at the Karolinska University Hospital, Stockholm were recruited following written informed consent. The patients were diagnosed with the following forms of brain cancer: A: diffuse or anaplastic astrocytoma (IDH-wildtype/-mutant/not otherwise specified (NOS)); OD: oligodendroglioma or anaplastic oligodendroglioma (IDH-mutant and 1p/19q-codeleted/NOS); OA: oligoastrocytoma or anaplastic oligoastrocytoma (NOS); GBM: glioblastoma multiforme (IDH-wildtype/-mutant/NOS); Met: metastatic brain tumor. All participating patients were chemotherapy-naïve and had not undergone surgery. The tumours were graded according to the WHO grading system for tumours of the central nervous system [2 (link)]. The clinical characteristics of the study cohort is summarised in Table 1. Peripheral blood samples were collected in heparin-containing tubes by venepuncture and processed in the laboratory within 24 hours. GBM tumour tissue samples were placed in Cellgro medium (Cell Genix, Freiburg, Germany) containing 10% human AB serum (Innovative Research, Michigan, USA) and processed within 3 hours.
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7

Generation of Dendritic Cells and T-Cell Assays

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To generate DCs, CD14+ monocytes were cultured (3-5 x 106/well; 6-well plate; total volume, 6 ml; 37°C/5% CO2) for 8 days in R9 medium (RPMI 1640, 100 µg/ml penicillin, 100 U/ml streptomycin, 25 µg/ml transferrin, 10% human AB serum [Innovative Research], 25 mM HEPES buffer, 2 mM L-glutamine) supplemented with GM-CSF and IL-4 (800 U/ml) [PeproTech Ltd]. To induce DC maturation, 25 ng/ml TNF-α [PeproTech Ltd] and 1 µg/ml lipopolysaccharide [Sigma-Aldrich Ltd, E.coli 0111:B4] were added on the penultimate day of culture. Naïve or memory CD3+ T-cells, with Tregs removed, were cultured (2.5 x 106/well; 24 well plate; total volume, 2 ml) with autologous mature DCs (0.8 x 105/well) and SMX-NO (50 µM) for 8 days. To specific wells, human targeted anti-PD-L1, anti-CTLA4, or anti-TIM-3 antibodies (Biolegend, London, UK; anti-PD-L1, 5 µg/ml; anti-CTLA4, 10 µg/ml; anti-TIM-3, 7.5 µg/ml) were added prior to the addition of SMX-NO and incubated for ≥ 30 min (37°C/5% CO2). Dose ranging studies were performed around those directed by the supplier to ascertain optimal antibody concentrations. Alternatively, specific quantities of autologous CD25+ Tregs were added to individual wells. Experiments were repeated a minimum of three times.
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8

Dendritic Cell-Mediated T-Cell Modulation

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CD14+ cells were cultured in medium (RPMI-1640, 100μg/ml penicillin, 100U/ml streptomycin, 25μg/ml transferrin, 10% human AB serum [Innovative Research; MI, USA], 25mM HEPES buffer, and 2mM L-glutamine) supplemented with GM-CSF and IL-4 (800U/ml; 37°C/5% CO2) for 7 days to generate dendritic cells. On the penultimate day, 25ng/ml TNFα and 1μg/ml LPS were added as maturation factors. Dendritic cell phenotype (CD1a,CD11a,CD11c,CD14,CD40,CD80,CD83,CD86,CD274,MHC class II) was measured by flow cytometry.
Mature dendritic cells were plated (0.8×105 per well) and cultured with naive CD3+ T cells (2.5×106 per well; 24 well plated total volume 1.5ml) and SMX-NO (50μM) or flucloxacillin (2mM) for 8 days. Anti-PD-L1 and/or PD-L2 antibodies (Biolegend UK Ltd, London, UK; 10μg/ml) were added to certain wells. Both antibodies have previously been shown to block the receptors (24 (link)). Antibody concentrations were optimized in dose-ranging studies around the concentration suggested by the supplier. Where indicated, TGF-β (5ng/ml), IL-1β (10ng/ml) and IL-23 (20ng/ml) or TNFα (50ng/ml) and IL-6 (20ng/ml) were added to the cultures to induce the differentiation of Th17 and Th22 cells, respectively. All experiments were performed at least three times using cells from different blood donors with no previous history of sulfonamide/flucloxacillin exposure.
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9

Expansion and Cryopreservation of B Cells

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PBMC were thawed and resuspended in prewarmed Iscove’s Modified Dulbecco Medium (IMDM, Gibco) with 10% heat-inactivated human AB serum (Innovative Research, lot pretested for performance for B-cell expansions), penicillin-streptomycin, L-glutamine (both from Sigma), and insulin-transferrin-selenium (Thermo Fisher Scientific), recombinant human multimeric CD40L (Human CD40-ligand multimer kit, Miltenyi Biotec), recombinant human IL-4 (Miltenyi Biotec) and recombinant human IL-21 (ImmunoTools) (B-cell medium), supplemented with cyclosporine A (Novartis). On days 6–8, B cells were enriched using CD19 MicroBeads (Miltenyi Biotec) and resuspended in prewarmed B-cell medium. Afterwards, B cells were counted every 72–96 hours and resuspended in prewarmed B-cell medium. When B-cell numbers were sufficient to perform T-cell assays, B cells were frozen in Cryostor CS10 medium (StemCell Technologies) prior to their use as antigen-presenting cells (APCs) in T-cell assays.
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10

PBMC Functional Response Assay

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Functional responses by PBMC were tested, using a published protocol.15 Briefly, PBMCs were stimulated for 6 days in RPMI 1640 culture medium (Life Technologies) supplemented with 5% of heat‐inactivated Human AB serum (Innovative Research), with 2 µg/ml anti‐CD3/anti‐CD28 antibody (BioLegend; positive control), medium (negative control), 10 µg/ml SARS‐CoV‐2 recombinant nucleoprotein (Leinco Technologies) or spike glycoprotein (a gift from Dr. Olli Ritvos, University of Helsinki) expressed in HEK293 cells.
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