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19 protocols using tms microscope

1

Rheumatoid Arthritis Synovial Explant Model

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To examine RA synovial outgrowths, an ex vivo synovial tissue explant model was utilised [22 (link)]. A total of 50 μl of matrigel (Bio-sciences) was added to each well of a 96-well plate and incubated for 1 h at 37 °C. Following this, RA synovial tissue was sectioned and placed in matrigel wells with RPMI 1640 medium supplemented with 10 % FCS (Gibco-BRL), 10 ml of 1 mmol/l HEPES (Gibco-BRL), penicillin (100 units/ml; Bio-sciences), streptomycin (100 units/ml; Bio-sciences) and fungizone (0.25 μg/ml; Bio-sciences). RA explants were stimulated with TLR2 ligand Pam3CSK4 (1 μg/ml) over a time course of 1–15days. Supernatants were collected every 4 days and replenished with fresh media and experimental agents. Images were taken using a phase-contrast microscope (a Nikon TMS microscope (Nikon Corp., Tokyo, Japan) linked to a Canon S70 camera (Canon Inc., Tokyo, Japan)).
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2

Transwell Invasion Assay for Cancer Cells

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MDA-MB-231 and BT-549 cells were plated in serum-free media at a density of 3.75×105 cells/ml into Matrigel-coated transwells (BD, Franklin Lakes, NJ). Transwells were then placed in 24-well containing growth media. Invasion was permitted to occur over 5 hours and cells on the upper surface of the filter were mechanically removed with a cotton swab. Cells migrated to the lower side of the filter were stained with 0.9% Crystal Violet and counted in 5 different high-powered fields using an inverted Nikon TMS microscope (Melville, NY).
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3

Matrigel Invasion Assay for Cell Migration

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Cell invasion was assayed using the BD Falcon matrigel invasion chambers (BD Biosciences, San Jose, CA, USA) and the accompanied manufacturer’s instructions were followed. HuNB(-MGAT2) cells transiently transfected for 72 h were used for the cell invasion assay. Briefly, the matrigel of 24-well plates were rehydrated by addition of DMEM for 2 h at 37°. Cells (5.0 × 104) in serum-free DMEM (500 µL) were plated in each transwell insert. NIH-3T3 conditioned media (500 µl) was added to the lower chamber of the plate and cultured at 37 °C for 24 h. Cells in the interior of the transwell insert were gently removed, and cells on the bottom surface of the insert were fixed with 100% methanol and stained with 1% Toluidine blue. Three experiments were conducted in quadruplicate. Cells from five fields per membrane insert were counted using a Nikon TMS microscope (Nikon, Chiyoda, Japan). Each of the cell lines were normalized to the HuNB cell line. Images were captured using an Olympus IX71 microscope (Olympus, Center Valley, PA, USA).
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4

Wound Healing Assay for Breast Cancer Cell Migration

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Migration of breast cancer cells was examined with the help of wound-healing assays, which is standard procedure in monitoring cell migration [5 (link)]. Approximately 0.8 ×106 cells were plated in each well of a 6-well plate and incubated overnight in a medium (RPMI-1640 or DMEM) containing fetal bovine serum (FBS, 10%). Cells were allowed to incubate overnight in 5% FBS-supplemented medium. It was observed that 5% FBS (instead of 0 or 10%) was optimal to monitor the effect of AA-induced migration of MDA-MB-231 cells. The monolayers were wounded by scratching with a sterile 10-μL pipette tip [5 (link)] and treated individually or in combination with AA (100 μM), NDGA (5μM), zileuton (100 μM), LTB4 (100 nM) PGD2 (10 ng/ml), and methyl-β-cyclodextrin (MBCD, 1 mM) for 24 h. The cell images that had migrated between wounded regions were captured using a Nikon-TMS microscope equipped with a Nikon F-601 camera and then counted. The cells treated with NDGA or AA+NDGA were also supplemented with either PGD2 or LTB4.
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5

Quantifying Rhodopsin Levels in Fly Eyes

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Relative rhodopsin content was estimated as previously described (e.g., [61] ) by exploiting the spectral properties of the two, photointerconvertible thermostable states of the fly visual pigment: rhodopsin (R), absorbing maximally at 480 nm and metarhodopsin (M) absorbing maximally at 570 nm. Long wavelength light scattered back out of the eye is more effectively absorbed by M than it is by R. To measure the back-scattered light, intact flies of different genotypes on white-eyed backgrounds were mounted in truncated pipette tips (as for ERGs) and imaged with a 20x air objective on an inverted Nikon TMS microscope. Photoequilibrating blue light (470 nm) was first delivered to generate ~70% M and then yellow/green light (540 nm) was delivered to convert M back to R. The back-scattered light, which was measured with a photomultiplier (Cairn Research UK), increased exponentially as M was photoreconverted to R, and the relative increase provides a measure of the concentration of visual pigment (Figure S1).
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6

Colony Formation Assay with Drug Treatments

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Cells were plated in 35-mm dishes in triplicates at low densities in Methocult H4100 (Stem Cell Technologies) and treated with different concentrations of drugs vs. no drug control. Cells were incubated for 7 to 12 days. The colonies were counted using a Nikon TMS microscope and compared with untreated cells.
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7

Cell Proliferation on Hydrogels

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Prepared hydrogels were transferred to nonadhesive 24-well cell culture plates (Corning Inc., Corning, NY) and rinsed overnight in 1 mL DMEM at 4 °C. Cell proliferation experiments used MC3T3-E1 preosteoblast cells (passage 24, ATCC CRL 2593, Manassas, VA) seeded at 5000 cells per cm2. Cells were seeded onto the surface of the hydrogels, cultured in 0.5 mL of Minimum Essential Medium Alpha (αMEM, Thermo Fisher Scientific) with 10% fetal bovine serum (FBS, Fisher Scientific) changed every other day, and observed at 12 h, 4 days, and 7 days. Cells were photographed on a TMS Microscope (Nikon, Tokyo, Japan) using a Nikon CoolPix camera. At these time points, cells on the hydrogels were incubated for 1 h with phanazine methosulfate (PMS) and 3-(4,5-Dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium, (MTS) (Promega, Madison, WI), which can be reduced in the presence of metabolically active cells.53 (link) The assay was performed per manufacturer’s guidelines, and the absorption of resulting formazan product was measured at 490 nm using a VersaMax plate reader (Molecular Devices, Sunnyvale, CA), with N = 4 samples per condition at each time point. Absorbance readings were normalized to the calcium-cross-linked hydrogels at the 12 h time point, allowing a relative measure of cell number changes over time.
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8

Quantifying Cell Invasion Potential

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Cell invasion was assayed using the BD Falcon matrigel invasion chambers (BD Biosciences, CA, USA). The assay was performed according to manufacturer’s instructions. In brief, DMEM was added to the transwell inserts in 24 well plates for 2 hours at 37° to rehydrate the matrigel. Media was removed and 2.5 X 104 cells in 500 μl of serum free DMEM were seeded in each transwell insert. Quadruplicate samples were used for each of the three experiments. The lower chamber of the plate was filled with 500 μl of NIH-3T3 conditioned media. After 24 hour incubation at 37°, the cells remaining on the interior of the transwell insert were gently removed, while the invasive cells on the bottom surface of the insert were fixed with 100% methanol and stained with 1% Toluidine blue. The membranes were removed from the insert and cells from five fields per membrane were counted using a Nikon TMS microscope. Images were acquired using an Olympus IX73. The number of invasive cells was determined for each cell line and then normalized to the NB_1 cell line.
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9

Magnetically Driven Cellular Uptake

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PC-3 cells were grown on a Petri dish. The cells were treated with 20 µL of rHDL–SPION particles. A magnetic force was applied at one end of the Petri dish to attract SPIONs. The plates were incubated at 37°C for 5 minutes. The cells were then washed with PBS (pH 7.4), keeping the magnet attached at the end. Equal parts of 20% HCl and 10% potassium ferrocyanide (Prussian blue) were prepared immediately before use.38 The plate was covered in this solution for 20 minutes, washed three times with distilled water, counterstained with nuclear fast red for 5 minutes and rinsed twice with distilled water. Images were taken at areas near and away from the magnetic field using a TMS microscope (Nikon Instruments Inc., Melville, NY, USA) with camera.
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10

Cell Viability Determination via LIVE/DEAD Assay

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For cell viability determination under the microscope, samples were stained with the LIVE/DEAD® Viability/Cytotoxicity Kit. First, microcapsules retrieved from the devices were washed four times in a test tube with DPBS and allowed to sediment. Then, they were stained with 0.5 µM calcein AM and 0.5 µM ethidium homodimer-1 in DPBS on 96-well plates at room temperature for 40 minutes in the dark. Next, samples were observed under a Nikon TMS microscope with the excitation/emission settings for calcein AM (495/515 nm) and ethidium homodimer (495/635 nm). At least three independent experiments were analyzed for each condition.
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