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23 protocols using incucyte live cell analysis imaging system

1

Spontaneous cell migration assay

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Spontaneous migration assay was performed as described previously [39 (link)]. Briefly, 250 cells were seeded in a complete medium into each well of the dedicated 96-well plate (IncuCyte ImageLock, Sartorius, Goettingen, Germany), and the plates were incubated in an IncuCyte Live Cell Analysis Imaging System (Sartorius, Goettingen, Germany). Series of plate images were collected from 0 to 72 h every 2 h. Collected images were analyzed with a Manual Tracking plugin (ImageJ, F. Cordelieres, Institute Curie, Paris, France).
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2

Live Cell Confluency Monitoring

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Cells were treated as indicated and percentages of cell confluency in the culture wells were measured every 2 hours using the Incucyte® Live Cell Analysis Imaging System (Sartorius, Germany).
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3

Cell Proliferation Monitoring Protocol

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Cells were seeded in 96‐well plates at a density of 3000 cells/well. Cell proliferation was monitored with IncuCyte live cell analysis imaging system (Sartorius). Data are presented as mean ± S.E.M. (n ≥ 3).
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4

Prokinectin-Mediated Cell Proliferation

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A total of 6 × 103 cells per cell line (bEnd.3, C8-D30, N2a) were seeded in 96-well plates and incubated (37 °C, 5% CO2) for the next day in presence of a specific medium for each cell line. The next day, cells were deprived by replacing the medium with one derived from FBS (1% FBS) for 5 h before adding ligands. PROK1 or PROK2 cells were incubated with or without PROK1 or PROK2 at different concentrations (0.5–30 nM) in serum-free media, for 40 h. A control group consisting of cells incubated without ligands was included. Proliferation was assessed using the IncuCyte® Live Cell Analysis Imaging System (S3, Sartorius, France). The results are presented at the time point T = 40 h, for each given concentration of PROK1 or PROK2. All samples consisted of 3 replicates. Experiments were repeated at least 3 times.
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5

Live Cell Imaging for Cell Morphology

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Lower power images were captured on a Nikon Eclipse Ti2 inverted microscope. Higher magnification images were taken using an Olympus FV3000 confocal microscope. Images were colour-balanced using Adobe Photoshop CS5 (Adobe Systems Incorporated) with the entire field of view being altered uniformly. Figures were compiled using Adobe Illustrator CS5 (Adobe Systems Incorporated). For live cell imaging, the IncuCyte Live Cell Analysis Imaging System (Sartorius) was used. Images were taken every 30 min in the red and green fluorescence channels. Analysis was performed using CellProfiler 3.0 cell image analysis software and NIS-Elements AR 5.200 software. Cell length was measured using the NIS-Elements AR 5.200 software manually, using 15–20 fields of view (FOVs), 10–15 cells per FOV, with three biological and three technical repeats.
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6

Cell Proliferation Assay Protocol

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Cells were trypsinized, counted, plated in 2 mL complete RPMI at 10,000 cells per well of a 12-well plate, and allowed to attach overnight. Cells were then washed two times with 1 mL PBS per well, then treated with 2.5 mL of the indicated medium. A replicate plate was counted to determine starting cell number at the time of treatment. 72 hr post-treatment, cells were counted to calculate proliferation rate. Cell counts were determined using a Multisizer 3 Coulter Counter (Beckman Coulter) with a diameter setting of 10–30 μm. Proliferation rate was determined using the following formula:
Proliferationrate(Doublingsperday)=[log2(Finalcellcount/Initialcellcount)]/3days
For assessment of proliferation by continuous live cell imaging, cells were trypsinized, pelleted and washed with PBS, counted, resuspended in the appropriate medium, then plated directly into clear 96-well plates at the cell densities as indicated. Plates were placed into an IncuCyte Live Cell Analysis Imaging System (Sartorius), and images were acquired every 3 hr using the 10x objective. Cell confluence was determined from a mask generated by the IncuCyte Zoom Analysis S3 2017 software’s standard settings.
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7

Live Imaging of Cell Cycle Progression

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Cell population growth in medias with increasing amounts of D2O was measured by imaging cell confluency on a plate over ~3 days. Confluency was monitored using the IncuCyte live cell analysis imaging system by Sartorius. Imaging was carried out every 3 hr using 4× objective and confluency was analyzed using IncuCyte S3 2017 software’s standard settings. The confluency data were then used to calculate confluency doubling time, which was used as a proxy for cell cycle duration. For validations of cell morphology in mitosis, cells were imaged every 2 min with 20× objective using the IncuCyte. Metaphase-anaphase transition was detected by simultaneous imaging of the FUCCI cell cycle sensor on FITC channel. The example images were overlaid and processed in the IncuCyte S3 2017 software.
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8

2D Cell Proliferation Assay

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To determine 2D cell proliferation, 5 × 103 cells were plated in 96-well plates and incubated 24 h prior to the first confluence measurement using the IncuCyte live cell analysis imaging system (Sartorius, Göttingen, Germany). Measurements were performed every 6 h up to 72 h. The growth curve was determined by the IncuCyte analysis software and the doubling time was calculated from the growth curve.
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9

CRISPR-mediated B2M knockout in hESCs

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The guide sequences were designed according to the B2M gene using the online CRISPR design tool (crispr.mit.edu) as follows CGCGAGCACAGCTAAGGCCA and ACTCTCTCTTTCTGGCCTGG. Corresponding annealed oligos B2M-sg1-F/R and B2M-sg2-F/R (Table S1) were cloned into BbsI-digested pSpCas9n(BB)-2A-GFP (PX461) and pSpCas9n(BB)-2A-Puro (PX462) V2.0 (Addgene: #48140 and #62987, gifts of Feng Zhang) 72 (link) to generate B2M targeting plasmids PX461-sgB2M1 and PX462-sgB2M2.
HESCs were transfected with B2M targeting plasmids using the Lipofectamine 3000 reagent. GFP+ cells were enriched using FACSAria III (BD Biosciences). Single-cell clones were obtained using the Incucyte Live Cell Analysis Imaging System (Sartorius). Two individual clones were selected, referred to as H1 B2M-/- #1 and #2, respectively. For genotyping, genomic DNA was extracted from both H1 B2M-/- #1 and #2 hESCs using the TIANamp Genomic DNA Extraction kit (Tiangen, DP304). Amplicons were obtained using Q5 DNA polymerase, cloned into T vectors, and verified via Sanger sequencing.
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10

Quantifying Adipogenesis and Proliferation

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Live imaging for kinetics quantification of adipogenesis and for proliferation assay was performed using the IncuCyte Live Cell Analysis Imaging System (Essen Bioscience) with images acquired every 2h using the 10x objective. Proliferation was assessed using a confluency mask generated by the IncuCyte Zoom Analysis Software using phase images. For the kinetic quantification of adipogenesis, 3T3-L1 cells were differentiated as described above and supplemented with 200nM BODIPY 493/503, and green fluorescence images were acquired every 2h using default IncuCyte setting. Total green fluorescence intensity was determined from a green fluorescent mask generated by the IncuCyte Zoom Analysis Software.
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