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10 protocols using ciprofloxacin hydrochloride

1

Antibiotic Compounds Procurement Protocol

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Ciprofloxacin hydrochloride was purchased from MP Biomedicals (Santa Ana, CA, USA); erythromycin hydrochloride, vancomycin hydrochloride, ampicillin, ceftriaxone sodium, levofloxacin, imipenem monohydrate, gentamicin sulfate, tetracycline hydrochloride, colistin sulfate, penicillin G potassium, teicoplanin, linezolid, clindamycin hydrochloride, and metronidazole were purchased from Sigma-Aldrich (St Louis, MO, USA); meropenem was purchased from TCI (Portland, OR, USA); and daptomycin and fidaxomicin were purchased from Selleckchem (Houston, TX, USA).
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2

Antibacterial Zinc-Citrate Nanoparticles

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Chemicals used in this study include ciprofloxacin hydrochloride (MP Biomedicals, Santa Ana, CA, USA), zinc nitrate hexahydrate (98%, Sigma Aldrich, USA), trisodium citrate dihydrate (Sigma Aldrich, St. Louis, MO, USA), ferric chloride (Himedia, Mumbai, India), Luria agar and Luria broth (Himedia, Mumbai, India), sodium hydroxide (Merck, Kenilworth, NJ, USA), and hydrochloric acid (35.5%, Merck). All the chemicals were of molecular grade.
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3

Constructing Pseudomonas aeruginosa gyrA Mutants

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The strain MPAO1 was obtained from the Pseudomonas aeruginosa Two-Allele Library (Manoil Lab; University of Washington Genome Sciences, Seattle, WA76 (link)), and the strain PAO1 belongs to the Goldberg Lab’s bacterial collection (Emory University, Atlanta, GA). The PAO1 gyrA mutant strains were constructed by transferring the plasmids carrying mutant gyrA alleles by two-step allelic exchange77 (link). Mutations were introduced to the WT gyrA gene cloned into pEx18Tc plasmid by overlap extension PCR cloning78 (link).
Cultures were grown in Luria Bertani (LB) medium with a NaCl concentration of 5 g/L, or in M9 medium (M9 minimal salts (Gibco) supplemented with MgSO4 (2 mM), CaCl2 (100 μM), and sodium citrate tribasic (0.25%)). Cells were always plated on LB agar (bacto agar 2%). Selective plates for the selection experiments contained 2 μg/ml of ciprofloxacin hydrochloride (MP Biomedicals).
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4

Ciprofloxacin Stock Preparation Protocol

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In total, 5 mg/mL ciprofloxacin (CP) stock was prepared by dissolving ciprofloxacin hydrochloride (MP Biomedicals, Santa Ana, CA, USA) in de-ionized water. The stock was filtered with a 0.22 μm PES membrane sterile filter (Millex®GP filter unit) and stored at 2 °C.
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5

Preparation and Dilution of Antibiotic Stocks

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A stock of 5 mg ml−1 of ciprofloxacin in sterile, de-ionized water was prepared with ciprofloxacin hydrochloride (MP Biomedicals, Santa Ana, CA, USA) and mixed thoroughly. Tobramycin stock was made in a similar fashion by mixing 5 mg ml−1 of Tobramycin sulfate salt (Sigma-Aldrich, St Louis, MO, USA) in sterile, de-ionized water. Erythromycin was obtained from MP Biomedicals and the stock was prepared by mixing 5 mg m ml−1 Erythromycin into ethanol as directed. Each antibiotic mixture was then filter sterilized through a 0.22 μl PES membrane sterile filter (Millex®GP filter unit) and stored at 2 °C. Each antibiotic was then diluted from the stock solution into sterile TSB at an array of concentrations in a 96-well challenge plate used that day.
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6

Antimicrobial Activity Evaluation

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Polymyxin B sulfate salt (Sigma Aldrich, Singapore) and Ciprofloxacin Hydrochloride (MP Biomedicals, LLC, France) were prepared in sterile deionized water in the range of a final concentration of 4–1024 µg/mL. Tannic acid powder and tannic-acid-stabilized AgNPs were provided by Prime Nanotechnology Co., Ltd. (Bangkok, Thailand), our collaborator, with a stock concentration of 10,000 mg/L. AgNPs solution for use was the same preparation as the method above.
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7

Collagen Sponges with Ciprofloxacin

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Collagen-based sponges were prepared starting from a collagen gel of 1.91% and acidic pH. This gel was obtained from bovine derma using a current technology at INCDTP—Division Leather and Footwear Research Institute, Collagen Department (Bucharest, Romania) [40 (link),41 ]. Ciprofloxacin Hydrochloride (MP Biomedicals, LCC, Solon, OH, USA) was added in concentration of 0.5; 0.75 and 1 g/g to a collagen solution (1%, pH 7.4) prepared from the initial gel with 1 M sodium hydroxide. The obtained solutions were further cross-linked with 0.5% glutaraldehyde reported to dry collagen. The sponge materials were obtained by lyophilization process consisting of three steps: (i) freezing at −55 °C for 1 min; (ii) drying at −55 °C for 15 h—time in which approximately 90% of water is sublimated; and (iii) final-drying at −40 °C for 10 min. The sublimation process took place under vacuum and was performed using Delta 2-24 LSC (Martin Christ, Osterode am Harz, Germany) equipment. All obtained collagen sponges of 2 cm diameter and 0.5 cm thickness were packed in polyethylene bags and sterilized at 254 nm using Vilber–Lourmat equipment (Suebia, Germany).
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8

Antibiotic Susceptibility Profiling of M. abscessus

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Select edited M. abscessus strains were further phenotypically verified for loss of function by determining MICs against ampicillin sodium (EMD Millipore), rifampicin (Sigma-Aldrich), and capreomycin sulfate (Sigma-Aldrich). Strains were grown to optical density at wavelength 600 nm (OD600) ~0.8–1.0 in media supplemented with KAN and HYG. Cultures were diluted to 100 µL of serially diluted antibiotics in 96-well clear bottom plates (Corning) (final OD600 = 0.0025) in four technical replicates. One percent dimethylsulfoxide (DMSO) (Sigma-Aldrich) was used as the negative untreated control, and 25 µg/mL ciprofloxacin hydrochloride (MP Biomedicals) was used as the positive control. Plates were incubated at 37°C without shaking for approximately 4 days before OD600 measurements. Growth (%) was calculated by normalizing OD600 from treatment wells with OD600 from DMSO control wells and plotted using GraphPad Prism 9.4.0. MIC values were taken as the minimum concentration needed to inhibit growth by 90%.
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9

Preparation of Antibiotic Stock Solutions

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A total of 5 mg mL−1 ciprofloxacin stock was prepared by dissolving ciprofloxacin hydrochloride (MP Biomedicals, Santa Ana, CA, USA) in deionized water. Tobramycin stock was prepared following the same procedure by dissolving Tobramycin sulfate salt (Sigma Aldrich, St. Louis, MO, USA). Erythromycin was obtained from MP Biomedicals, and the stock was prepared by mixing 1.5 mg mL−1 Erythromycin into deionized water. Stocks were filtrated using a 0.22 μm pore PES membrane sterile filter (Millex®GP filter unit) and stored at 2 °C.
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10

Ciprofloxacin Hydrochloride Formulation

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Ciprofloxacin hydrochloride (CH), a broad-spectrum, fluoroquinolone antibiotic used clinically against P. aeruginosa infections, was purchased from MP Biomedicals LLC (Solon, OH). L-glutamic acid (GA, a nutrient dispersion compound), L-leucine (an excipient to enhance powder flowability), silicone oil DC 200, and hexane mixture of isomers reagent 98.5% were purchased from Sigma-Aldrich (St. Louis, MO). Hydrochloric acid was purchased from VWR (West Chester, PA). Sodium hydroxide was purchased from Fisher Scientific (Fair Lawn, NJ). Purified water was obtained from a NanoPure Infinity Ultrapure Water System (Barnstead Int., Dubuque, IA).
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