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6 protocols using goat anti rabbit igg dylight 680 conjugate

1

Western Blot Analysis of Bacterial Virulence Factors

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For analysis of whole cell lysates, samples were taken after subculturing for 4 h at 27°C (analysis of Inv expression) or 37°C (analysis of YadA expression). Pellets were resuspended in H2O and Laemmli buffer (Bio-Rad) to obtain 5×106 bacteria/ml. Samples were boiled for 10 min at 95°C before loading on the gel. After SDS-PAGE proteins were transferred onto nitrocellulose membranes. The membranes were blocked overnight with 5% milk powder in PBS at 4°C. Membranes were probed with antisera against Inv (rabbit anti-Inv, 1:2000), YadA (rabbit anti-YadA, 1:1000), OmpA (rabbit anti-OmpA, 1:1000), OmpF (rabbit anti-OmpF, 1:1000), BamB (rabbit anti-BamB, 1:1000) and RNA-Polymerase β subunit (mouse anti-RNA-Polymerase, Neoclone, 1:1000) and secondary antibodies goat anti-rabbit IgG DyLight 680 conjugate or goat anti-mouse IgG DyLight 800 conjugate (Thermo Fisher scientific). For detection of bands, the Odyssey imaging system (Li-Cor Biosciences) was used.
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2

Purification and Characterization of Type III Secretion Proteins

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Chemicals were from Sigma-Aldrich unless otherwise specified. Detergents n-dodecyl-maltoside (DDM), Lauryl Maltose Neopentyl Glycol (LMNG) and pentaethylene glycol monooctyl ether (C8E5) were from Anatrace. para-benzoylphenylalanine was from Bachem. SERVAGel™ TG PRiME™ 4-20% and 8-16 % precast gels were from Serva and 4–20% Mini-PROTEAN® TGX™ were from Bio-Rad. Primers are listed in Table S4 and were synthetized by Eurofins, Invitrogen or Sigma-Aldrich. Polyclonal rabbit anti-PrgK antibody was a kind gift of Thomas Marlovits, Vienna. Monoclonal M2 anti-FLAG antibody was from Sigma-Aldrich. Monoclonal anti-SipB and anti-InvJ antibodies were raised by Abmart. Secondary antibodies goat anti-mouse IgG DyLight 800 conjugate and goat anti-rabbit IgG DyLight 680 conjugate were from Thermo Fisher Scientific.
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3

Purification and Characterization of Type III Secretion Proteins

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Chemicals were from Sigma-Aldrich unless otherwise specified. Detergents n-dodecyl-maltoside (DDM), Lauryl Maltose Neopentyl Glycol (LMNG) and pentaethylene glycol monooctyl ether (C8E5) were from Anatrace. para-benzoylphenylalanine was from Bachem. SERVAGel™ TG PRiME™ 4-20% and 8-16 % precast gels were from Serva and 4–20% Mini-PROTEAN® TGX™ were from Bio-Rad. Primers are listed in Table S4 and were synthetized by Eurofins, Invitrogen or Sigma-Aldrich. Polyclonal rabbit anti-PrgK antibody was a kind gift of Thomas Marlovits, Vienna. Monoclonal M2 anti-FLAG antibody was from Sigma-Aldrich. Monoclonal anti-SipB and anti-InvJ antibodies were raised by Abmart. Secondary antibodies goat anti-mouse IgG DyLight 800 conjugate and goat anti-rabbit IgG DyLight 680 conjugate were from Thermo Fisher Scientific.
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4

Immunoblotting of HA-tagged proteins

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Chemicals were from Sigma-Aldrich unless otherwise specified. SERVAGel TG PRiME™ 8–16 % precast gels were from Serva. Primers were synthetized by Eurofins and Integrated DNA Technologies. Monoclonal anti-HA antibody was from Sigma-Aldrich. Secondary antibodies goat anti-mouse IgG DyLight 800 conjugate and goat anti-rabbit IgG DyLight 680 conjugate were from Thermo-Fisher (SA5-35571, 35568, respectively).
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5

Protein Expression and Detection

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Chemicals were from Sigma-Aldrich unless otherwise specified, para-benzophenylalanine was from Bachem. The radioactive [S35]-methionine was obtained from Hartman Analytics. SERVAGel™ TG PRiME™ 8–16% precast gels were from Serva. Primers are listed in Supplementary Data 3 and were synthetized by Eurofins and Integrated DNA Technologies. Monoclonal M2 anti-FLAG antibody was from Sigma-Aldrich (F3165). Secondary antibodies goat anti-mouse IgG DyLight 800 conjugate and goat anti-rabbit IgG DyLight 680 conjugate were from Thermo-Fisher (SA5-35571, 35568, respectively).
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6

Affinity Purification of Protein Complexes

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Chemicals were from Sigma-Aldrich unless otherwise specified. Detergent n-dodecyl-maltoside (DDM) was from Affimetrix-Anatrace. para-benzophenylalanine was from Bachem. SERVA Blue G and SERVAGel TG PRiME 8–16% precast gels were from Serva. NativePAGE Novex Bis-Tris 3–12% gels were from Life Technologies. Primers are listed in S5 Table and were synthetized by Eurofins and Integrated DNA Technologies. Polyclonal rabbit anti-MBP antibody were from New England Biolabs. Monoclonal mouse anti-RNApol antibody was from BioLegend. Monoclonal M2 anti-FLAG antibody, M2 anti-FLAG agarose beads, and 3xFLAG peptide were from Sigma-Aldrich. CaptureSelect-biotin, Streptavidin DyLight 800, and secondary antibodies goat anti-mouse IgG DyLight 800 conjugate and goat anti-rabbit IgG DyLight 680 conjugate were from Thermo-Fisher.
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