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9 protocols using gentian violet

1

Transwell Assay for Cell Migration

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Three group cells suspended in serum‐free media were added to a transwell insert (pore size 8 μm, Corning, USA) and placed on the 24‐well plate containing serum‐free medium containing 20 ng/ml vascular endothelial growth factor and incubated in a 37°C/CO2 incubator for 24 h. After incubation, cells in the transwell's upper chamber, which were not migrated, were removed gently with a cotton swab. Migrated cells were fixed with 4% paraformaldehyde for 30 min at room temperature and stained with gentian violet (Solarbio, China).
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2

Clonogenic Assay for Cell Survival

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A total of 1×103 cells/well were seeded into 6-well plates at a single cell density and treated with osimertinib or/and ABT-263 or DMSO (negative control) at the indicated concentrations for 48 h. The drug-containing medium was replaced with fresh medium and cells were cultured for 2 weeks. Then the cells were fixed with methanol for 15 min at room temperature, followed by staining with gentian violet (Beijing Solarbio Science & Technology Co., Ltd.) for 1 h at room temperature. The colonies with >50 cells were counted under an inverted microscope (IX71; Olympus Corporation; magnification, ×10).
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3

Colony Formation Assay Protocol

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1 × 103 cells were seeded in six-well plates at a single cell density and the fresh medium was added to allow cells to grow for at least one week. The colonies with more than 50 cells were counted after staining with gentian violet (Solarbio).
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4

Synthesis and Characterization of TMOC

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TMOC was synthesized according to the previous report and was determined by spectra including 1H-NMR, 13C-NMR, and high resolution mass spectrum (HRMS) which were great agreed with the literatures [14] (link), [15] (link). The purity of TMOC was more than 98% which was analyzed by HPLC.
RPMI-1640 medium and fetal bovine serum (FBS) were purchased from Thermo Scientific (South Logan, UT, USA). MTT, propidium indide (PI), 4,6-diamidino-2-phenylindole (DAPI), and the antibody to β-Actin were purchased from Sigma-Aldrich (St Louis, MO, USA). Gentian violet was purchased from Solarbio (Beijing, China). The Annexin V-FICT/PI apoptosis detection kit, invasion chambers, matrigel, and the antibody to p21 were purchased from BD Biosciences (Franklin Lakes, NY, USA). Cell lysis buffer and BCA protein assay kit were purchased from Beyotime (Shanghai, China). PVDF membrane and chemiluminescent reagents were from Millipore (Billerica, MA, USA). Antibodies to cyclin D1, CDK4, p16, p21, Bcl-xL, Bax, STAT3, p53, PTEN, c-myc were from Santa Cruz Biotechnology. Antibodies to phospho-Src (Tyr416), Src, phospho-STAT3 (Tyr705) and cleaved-PARP-1 were purchased from Cell Signaling Technology.
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5

Cisplatin-induced Clonogenic Assay

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A total of 500 cells were seeded at single-cell density in 6-well plates with fresh medium with or without cisplatin and allowed to grow for at least a week. Colonies with more than 50 cells were then stained with gentian violet (Solarbio) and counted.
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6

Colony Formation Assay with DOX

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Five hundred cells were seeded in six-well plates at a single-cell density. A blank group and DOX groups treated with or without 1 μg/ml of DOX were prepared for each cell type. Fresh medium was added every 3 days to allow cell growth. Colonies were stained with gentian violet (Solarbio) at 2-3 weeks and colonies with more than 50 cells were counted in each well. The assays were repeated three times.
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7

Bufalin and Paclitaxel Combination Assay

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1×103 cells were seeded in six-well plates at a single cell density and treated with Bufalin, paclitaxel, Bufalin plus paclitaxel or DMSO (diluent) at various concentrations for 24h, 48 h and 72h. Then the fresh medium was added to allow cell growth for at least one week. The colonies with more than 50 cells were counted after staining with gentian violet (Solarbio).
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8

Colony Formation Assay for Cancer Cells

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1 × 103 cells were seeded in six-well plates at a single cell density and treated with RY-2f, cisplatin, RY-2f plus cisplatin, or DMSO (diluent) at various concentrations for 48 h. Then the fresh medium was added to allow cell growth for at least one week. The colonies with more than 50 cells were counted after staining with gentian violet (Solarbio).
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9

Anticancer Effects of UNC0638 Compound

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UNC0638 was purchased from MedchemExpress LLC (Princeton, NJ, USA) and dissolved in dimethyl sulfoxide (DMSO). Dulbecco's modified Eagle's medium (DMEM) and fetal bovine serum (FBS) were purchased from Thermo Fisher Scientific, Inc. (Waltham, MA, USA). 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) and low melt point soft agar were purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany). Invasion chambers and matrigel were purchased from BD Biosciences (Franklin Lakes, NJ, USA). Gentian violet was purchased from Beijing Solarbio Science & Technology Co., Ltd. (Beijing, China). The Annexin V-fluorescein isothiocyanate/propidium iodide apoptosis detection kits (cat. no. 556570) were purchased from BD Biosciences. Cell lysis buffer (cat. No. P0013), a BCA protein assay kit (cat. no. P0011) and Primary Antibody Dilution Buffer (cat. no. P0023A) were purchased from Beyotime Institute of Biotechnology (Shanghai, China). Polyvinylidene fluoride (PVDF) membrane and chemiluminescent reagents were obtained from EMD Millipore (Billerica, MA, USA). Antibodies to E-cadherin (20874–1-AP), vimentin (10366–1-AP), Slug (12129–1-AP), Snail (13099–1-AP) and β-actin (60008–1-Ig) were purchased from Proteintech Group, Inc. (Chicago, IL, USA) and diluted at 1:1,000 with Primary Antibody Dilution Buffer (Beyotime, Beijing, China).
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