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3 protocols using l allysine ethylene acetal

1

Analytical Characterization of Fluorophores

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All reactants and reagents were of the highest purity. HPLC-grade acetonitrile was obtained from EMD Millipore (Billerica, MA, USA). Water was purified with a Milli-Q system (Millipore, Billerica, MA, USA). L-Allysine ethylene acetal (>98%), potassium hydrogen phthalate (>99%) and fluorescein (99%) were supplied by Sigma (Sigma-Aldrich, Saint Louis, MO, USA). Trifluoroacetic acid (99.5%)was purchased from Alfa Aesar (MA, USA), formic acid (99.0%) from Fisher Scientific (Fisher Scientific, Fair Lawn, NJ, USA) and sodium 2-naphthol-7-sulfonate (>98%) from TCI America (PA, USA). Analytical grade methanol and chloroform were obtained from VWR (PA, USA).
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2

Synthesis and Quantification of P6C/AASAL

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P6C/AASAL was prepared using a modified version of the previously
reported procedure.3 (link),9 (link) A 50 mg sample of L-allysine ethylene
acetal (Sigma-Aldrich) was stirred with 800 mg of Amberlyst-15 (dry)
ion-exchange resin (Sigma-Aldrich) in water (5 mL) for 30 min at 45 °C.
The reaction mixture was filtered through a sintered funnel, and the resin was
washed with water (5 mL). P6C/AASAL was eluted from the resin with 4 mL of a
28% ammonia solution. The filtrate was evaporated to dryness under a
stream of nitrogen, producing a pale yellow solid.
P6C/AASAL was quantitated by reaction with
o-aminobenzaldehyde (oAB). The synthesized
P6C/AASAL sample was dissolved in 1 mL of 100 mM sodium pyrophosphate buffer (pH
8.0). A P6C/AASAL dilution series was incubated with 200
μM oAB in a total volume of 1 mL
for 1 h at 37 °C. The concentration of the
P6C–oAB reaction product was determined from the
absorbance at 465 nm using an extinction coefficient
(ε) of 2.8 mM−1cm−1.10 (link)
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3

Deuterium-Labeled Metabolic Pathway Analysis

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Deuterium oxide (D2O), deuterated sulfuric acid (D2SO4), deuterated chloride (DCl), deuterated acetic acid (CH3CO2D), deuterated ethanol (CH3CH2-OD), deuterated ammonium hydroxide (ND4OD), L-allysine ethylene acetal (AEA), L-lysine, L-glutamine, AAA, PIP, L-amino acid oxidase from Crotalus adamanteus (Type IV), Lysine Oxidase from Trichoderma viride, Catalase from bovine liver, L-saccharopine, NAD + , 2,4-DNP, uridine 5′diphosphoglucuronic acid trisodium salt, amberlyst-15 and 6-oxo-PIP were purchased from Sigma-Aldrich Chemical Company (St. Louis, MO). D,L-2-Amino-1,6-hexanedioic-2,5,5-d3 (D3-AAA) was acquired from CDN Isotopes (Quebec, Canada), and all other reagents were procured from Fisher Scientific (Pittsburgh, PA). Control human plasma, blood and urine were purchased from Bioreclamation LLC (Westbury, NY). Human liver cytosol, S9 and microsomal subcellular fractions were procured from Xenotech LLC (Kansas City, KS).
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