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7 protocols using anti fade mounting medium containing dapi

1

Quantifying Phospho-ATR Immunofluorescence

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Labeling for phospho-ATR (p-ATR) was conducted using a polyclonal antibody against phosphorylated threonine 1989 on ATR (Genetex, Irvine, CA). Cells were plated in 8-chamber culture slides (BD Biosciences) at 9×104 cells per chamber. After 6 hours of treatment, culture medium was gently aspirated. Cells were air-dried and submerged in acetone chilled to −20°C for fixation and permeabilization. Cells were then rinsed with PBS and incubated with a blocking buffer containing 10% goat serum in PBS. Primary p-ATR antibody was diluted to 1:100 in blocking buffer, and cells were incubated with primary antibody solution in a humidified chamber overnight at 4°C. Cells were rinsed with cold PBS and incubated with a goat anti-rabbit secondary antibody conjugated with Alexa Fluor 594 (Life Technologies) diluted 1:500 in blocking buffer for 2 hours at room temperature. They were then washed, and an anti-fade mounting medium containing DAPI was applied (Vector Laboratories, Burlingame, CA). Slides were imaged using an Olympus IX71 inverted fluorescence microscope and appropriate filters. Images were taken with an Olympus F-View II digital monochrome camera and were processed using Image J software. Three to six images were taken for each chamber. Cells exposed to only the secondary antibody were used as a negative control, and no significant signal was detected in this group.
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2

Immunofluorescence Staining of CD4 and FOXP3

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Tissue slices were deparaffinized by sequential soaking in xylene, ethanol, and water. Antigen retrieval was performed with antigen unmasking solution (Vector Laboratory, catalog number: H-3300). Slides were blocked with 2.5% (wt/vol) normal goat serum to reduce nonspecific antibody binding. Slides were incubated with anti-CD4 (rabbit, Abcam, catalog number: ab183685, 1:100 dilution) and anti-FOXP3 (rat, LSBio, catalog number: LS-C344878, 1:100 dilution) antibodies at 4 °C overnight. Afterward, the slides were washed with TBST [20 mM Tris (pH 7.5), 150 mM NaCl and 0.1% (w/v) Tween 20]. They were then incubated with goat anti-rabbit Alexa Fluor 488 (Thermo Fisher, catalog number: A11008, 1:500 dilution) and goat anti-rat Alexa Fluor 594 (Thermo Fisher, catalog number: A11007, 1:500 dilution) for 1 h at room temperature. Afterward, slides were washed with TBST and mounted with Antifade Mounting Medium containing DAPI (Vector, catalog number: H-2000).
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3

Histochemical Analysis of Microglia in Mouse Brain

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For histochemical analysis, mice were transcardially perfused with saline and whole brains were fixed in 4% paraformaldehyde for 72 h. The fixed brains were incubated in 30% sucrose for 72 h, embedded in Optimal Cutting Temperature (O.C.T.) compound (Tissue-Tek), and then cut into 12-µm-thick sagittal sections. The sections were permeabilized with 0.3% Triton X-100 and blocked with 1% BSA and 5% normal donkey serum for 1 h at room temperature. The brain sections were incubated with primary antibodies (rabbit polyclonal anti-Iba-1 (1:500 dilution) at 4℃ overnight, followed by an incubation for 1 h at room temperature with secondary antibodies (Cy3-conjugated donkey anti-rabbit IgG; Jackson ImmunoResearch Laboratories). The anti-fade mounting medium containing DAPI (VECTASHIELD, Vector laboratories) was used for mounting and counterstaining. Tiled images of each section were captured with a CCD color video camera (Olympus D70) through a 63x objective lens attached to a microscope (Olympus BX51).
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4

Immunofluorescence for Active Caspase-3 Quantification

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Immunofluorescence was carried out for active caspase-3. Nonspecific binding was blocked for 1 h using 10% normal goat serum, 1% BSA, and 0.1% Triton X-100 and then incubated with rabbit antiactive caspase-3 primary antibody (1:900; R & D Systems) overnight at 4°C. A goat antirabbit FITC-conjugated secondary antibody was applied for 40 min at room temperature in the dark (1:200; Stratech Scientific, Newmarket, UK). Cover slips were mounted on glass slides with antifade mounting medium containing DAPI (Vector Laboratories) and assessed on a fluorescent microscope with a ×40 objective (Olympus, Southend-on-Sea, UK). Ten discrete glands each containing at least 20 cells were scored per animal from each treatment group. The total number of DAPI-stained nuclei and the total number of active caspase-3-positive cells were assessed per gland and presented as mean gland size and percentage of cells positive for active caspase-3. Data were normalized to untreated glands of each genotype.
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5

Immunohistochemical and Fluorescence Imaging of Amyloid-Beta and GFP in Brain Tissue

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Paraffin‐embedded brain sections were deparaffinized and rehydrated and subjected to antigen retrieval in sodium citrate buffer (pH 6.0) at 95°C for 10 min. After blocking, the sections were incubated with the primary antibody against Aβ at 4°C overnight. Biotin‐conjugated secondary antibody was added and incubated at 37°C for 30 min. Brown‐colored signals were generated by using the Vectastain ABC system (Vector Laboratories, Burlingame, CA, USA) and diaminobenzidine substrate (Wako). Finally, the sections were counterstained with hematoxylin and mounted for microscopy. Images were taken using an Olympus BX51 Light Microscope (Olympus, Tokyo, Japan). For tracing the GFP expression in brain tissues, paraffin‐embedded slides were deparaffinized, rehydrated, and mounted with Antifade Mounting Medium containing DAPI (Vector Laboratories) for 10 min, followed by the fluorescence imaging using an Olympus BX53 Fluorescence Microscope (Olympus).
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6

Nanoparticle-Induced Cellular Responses

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Pt nanoparticles were purchased from Nanjin XFNANO Materials Technology Co. Ltd. (Nanjing, China). TMB single color liquid, 2′,7′-dichlorofluorescein diacetate (DCFH-DA) were bought from Beijing Solarbio Science &Technology Co., Ltd. (Beijing, China). MitoSox Red was purchased from Thermo Fisher Scientific (USA). Dulbecco's Modified Eagle Medium (DMEM), trypsin-EDTA (100 × ), and Penicillin-Streptomycin Solution (100 × ) were obtained from Gibco Life Technologies (Grand Island, NY, USA). Fetal bovine serum (FBS) was obtained from HyClone (Boston, MA, USA). H2O2, Crystal Violet Staining Solution, Total Superoxide Dismutase Assay Kit with NBT, One Step TUNEL Apoptosis Assay Kit (Red Fluorescence), 4% paraformaldehyde, Autophagy Staining Assay Kit with MDC, 0.3% triton X-100 was from Beyotime Biotechnology Co., Ltd (Beijing, China). Salicylic acid (SA) was obtained from Aladdin. The Cell Counting Kit-8 was purchased from Dojindo Laboratories (Kumamoto, Japan). The antifade mounting medium containing DAPI was purchased from Vector Laboratories, Inc. (Burlingame, CA, USA).
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7

Immunohistochemical Analysis of 5-HT and SP in Shrews

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Shrews (n = 5–6 shrews per group) were treated with either vehicle or yohimbine (1 mg/kg, i.p.) and rapidly anesthetized with isoflurane and subjected to perfusion at 15 min and 30 min post-treatment to examine 5-HT and SP immunoreactivity. The experimental procedure prior to staining was performed as described above for Section 4.4.1. c-fos Staining and Image Analysis. Coronal brainstem sections (20 μm) were blocked with 0.1 M PBS containing 10% donkey serum and 0.3% Triton X-100, then incubated overnight at 4 °C with a mix of goat anti-5-HT primary antibody (1:1000, ab66047, Abcam) and rat anti-SP primary antibody (1:400, MAB356, EMD Millipore, Burlington, VT, USA) in 0.1 M PBS containing 5% donkey serum and 0.3% Triton X-100. Sections were washed 3 times (10 min each) in PBS and incubated in a mix of Alexa Fluor 488 donkey anti-goat (1:500, ab150133, Abcam) and cy3-conjugated donkey anti-rat (1:500, AP189C, EMD Millipore) secondary antibody in 0.1 M PBS containing 0.3% Triton X-100 for 2 h at room temperature. After washing with PBS 3 times (10 min each), sections were mounted with anti-fade mounting medium containing DAPI (Vector Laboratories). Images for the DVC were acquired using a confocal microscope (Zeiss LMS 880) as described above. Fluorescence intensity (mean gray value) of 5-HT and SP values were acquired using ImageJ software, as described previously [45 (link)].
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