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C myc

Manufactured by GeneTex
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The C-Myc is a lab equipment product that serves as a protein detection tool. It is used to identify and quantify the presence of the c-Myc protein, which is a transcription factor involved in various cellular processes. The C-Myc product provides a means to detect and analyze the expression levels of the c-Myc protein in biological samples.

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7 protocols using c myc

1

Protein Interaction Analysis Techniques

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MG132(52801ES08) and CHX (40325ES03) were purchased from Yeason (Shanghai, China). The following antibodies were used for western blotting: USP16 (A5861; Abclonal), c-Myc (GTX103436; GeneTex), β-actin (sc-47,778; Santa Cruz Biotechnology). Antibodies used for immunohistochemistry: USP16 (HPA021140; Sigma-Aldrich), Ki67 (sc-15,402; Santa Cruz), c-Myc (#ab32072, Abcam). Antibodies used for immunoprecipitation and immunofluorescence: Flag (#30503ES60, Yeason), USP16 (HPA021140; Sigma-Aldrich), c-Myc (13987S, Cell Signaling Technology).
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2

Lung Protein Expression Analysis

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Lung homogenate proteins were isolated using a Nuclear/Cytosol fractionation kit (Thermo Fisher Scientific Inc, Bartlesville, OK, USA). Equal amounts of lysate protein were separated by 8–15% SDS-PAGE and transferred to PVDF membranes. Membranes were blocked in 5% skim milk. They were then incubated with primary antibodies against Proliferating cell nuclear antigen (PCNA), Glucose transporter 1 (GLUT1), (Santa Cruz Biotechnology, Inc., TX, USA.), Carbonic anhydrase 9 (CA9) (GeneTex, Inc. CA, USA.), c-Myc, cyclin D1, cyclin-dependent kinase 4 (CDK4), survivin, p21, HIF-1α, VEGF, Bcl2, mammalian target of rapamycin (mTOR), ERK1/2, β-catenin, the nuclear factor erythroid 2-related factor 2 (Nrf2), or β-actin (Cell Signaling Technology, Inc., Danvers, MA, USA) at a 1:1,000 dilution at 4 °C overnight. Target proteins were detected using the enhanced chemiluminescence method (Bio-Rad, Hercules, CA, USA). Signal detection was performed using ImageQuant LAS 500 Imaging System (GE Healthcare, Life Sciences, Korea). Collagenolytic activities in serum were measured by gelatin zymography. The gels were stained with Coomassie Brilliant Blue R-250 and then destained with methanol-acetic acid-water.
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3

Western Blot Analysis of Signaling Proteins

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Cells were lysed in ice-cold RIPA buffer (50 mM of Tris-HCl pH 7.4, 150 mM of NaCl, 1% Triton X-100, 0.25% deoxycholate, 1.5 mM of MgCl2, 1 mM of EGTA, 1 mM of phenylmethylsulfonyl fluoride, 10 mM of ZnAF, 10 mM of pervanadate, 10 µg/ml of leupeptin and 10 µg/ml of aprotinin) and incubated for 30 min. The protein concentration was determined using the BCA method. The cell lysate was heated at 100°C for 10 min after being mixed with sample loading buffer. The protein samples were equally loaded on 10% SDS-PAGE, and transferred onto nitrocellulose membranes. After being blocked with 5% non-fat milk in Tris-buffer, the membrane strips were incubated with a primary antibody overnight at 4°C, followed by Alex Fluor 680/790-labeled goat anti-rabbit or goat anti-mouse IgG (Li-COR Biosciences, Lincoln, NE, USA). The strips were visualized using the LI-COR Odyssey Infrared Imaging System (Li-COR Biosciences).
The primary antibodies were as follows: p38, phospho-p38, ERK, phospho-ERK, JNK and phospho-JNK (1:1,000; Cell Signaling Technology, Danvers, MA, USA); MMP2, VEGF, EGFR, cyclin D and E (1:1,000; Abcam, Cambridge, MA, USA); p65, Bcl2, Snail, c-MYC, SSRP1 and GAPDH (1:1,000; GeneTex, Inc.).
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4

Organoid and Adenoma Histological Analysis

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After fixation of 4% formalin for 1 h, organoids were washed and resuspended in 60 μL of warm (45°C) 1% agarose. After solidification and gradient dehydration, the agarose containing organoids was embedded in paraffin and underwent routine sectioning at the thickness of 5 μm. The primary adenoma tissues were fixed by 4% formalin followed by routine dehydration and sectioning. For morphological analysis, adenoma or organoid sections were prepared for hematoxylin eosin staining. For Immunohistochemical staining, sections were incubated with primary antibodies at 4 °C overnight, including anti-Ki-67 (CST, 1:200), anti-OLFM4 (CST, 1:200), and c-Myc (GeneTex, 1:200). Followed by PBS washing, secondary antibody conjugated with biotin was incubated at room temperature for 1 h, then stained with diaminobenzidine (DAB) according to manufacturer’s instructions (GBI, USA) and subsequently counterstained with hematoxylin. Images were taken by Vectra Automated Quantitative Pathology Imaging System (Perkin Elmer). The intensity of immunohistochemistry staining was scored as follows: 0, weak as light brown; 1, strong as dark brown or even near black.
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5

Immunohistochemical Analysis of Mouse Intestine

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Mouse intestine samples were fixed with 4% paraformaldehyde or 10% neutral buffered formalin for 24 hr and paraffin embedded. 5 μm thick serial sections were used for H&E or other staining. Antibodies used were against: CD44 C-terminal, Chromogranin A (Abcam), BrdU, CD45 (eBioscience), phospho-Src, phospho-STAT3, phospho-STAT1, YAP, HES1, MMP7, phospho-ERK1/2, phospho-S6, CyclinD1 (Cell Signaling), Lysozyme (Santa Cruz), Ki67 and c-Myc (GeneTex). Measurements for each quantitative outcome were collected from 30–50 crypts or villi analyzed from 3–6 independent fields of small intestine or colon of several independent mice (n=2–6).
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6

Signaling Pathway Analysis in Macrophage-Stimulated Cells

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After stimulation with macrophage CM, cells were washed with PBS, scraped into RIPA buffer and centrifuged. The cell lysates were subjected to 10% SDS-PAGE and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore Corp.) The membrane was probed using primary antibodies for β-catenin, AKT, ERK, JNK (SC1496, SC8312, SC154, SC474, Santa Cruz Laboratories, Santa Cruz, CA, USA), MMP7 (MAB3322, CHEMICON, Temecula, CA, USA), CD44 (ab51037, Abcam, Cambridge, MA, USA), c-myc (GTX103436, GeneTex, Hsinchu City, TAIWAN), cyclin D1 (SC246, Santa Cruz Laboratories, Santa Cruz, CA), β-actin (ab8226, Abcam), HDAC1, p-AKT, p-ERK, p-JNK (SC7872, SC7985-R, SC7383, SC6254, Santa Cruz Laboratories, Santa Cruz, CA) and secondary antibody (Santa Cruz Biotechnology).
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7

Identifying USP16 and c-Myc Interactions

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Short hairpin RNA (shRNA) sequences are listed in Additional le 1: Table S1. These sequences were cloned into the pLKO.1 vector, while Flag-tagged USP16 and c-Myc were cloned into the pLVX vector (Clontech 632187). Plasmids were transfected into HEK293FT cells using PEI 25K (23966-1; Polysciences, Warrington, PA, USA) according to the manufacturer's instructions. Stable transformants of PC3 and DU145 cells were isolated in standard medium supplemented with puromycin (5 μg/mL) (Sigma-Aldrich, St. Louis, MO, USA) for 7 days.
Reagents and primary antibodies MG132(52801ES08) and CHX (40325ES03) were purchased from Yeason (Shanghai, China). The following antibodies were used for western blotting: USP16 (A5861; Abclonal), c-Myc (GTX103436; GeneTex), β-actin (sc-47778; Santa Cruz Biotechnology). Antibodies used for immunohistochemistry: USP16 (HPA021140; Sigma-Aldrich), Ki67 (sc-15402; Santa Cruz), c-Myc (#ab32072, Abcam). Antibodies used for immunoprecipitation and immuno uorescence: Flag (#30503ES60, Yeason), USP16 (HPA021140; Sigma-Aldrich), c-Myc (13987S, Cell Signaling Technology).
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