The largest database of trusted experimental protocols

10 protocols using hypoxanthine

1

Radiolabeled Compounds for Cellular Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
[14C]Urate (55.0 mCi/mmol), [3H]guanine (10.7 Ci/mmol), [3H]hypoxanthine (27.0 Ci/mmol), [3H]thymine (65.0 Ci/mmol), and [3H]uracil (42.8 Ci/mmol) were obtained from Moravek Biochemicals (Brea, CA), [14C]inulin (1.9 mCi/g) was from American Radiolabeled Chemicals (St. Louis, MO), and [3H]polyethylene glycol 4000 (PEG 4000, 1.5 mCi/g) was from PerkinElmer Life Sciences (Boston, MA). Unlabeled urate, guanine, hypoxanthine, thymine, and uracil were obtained from Wako Pure Chemical Industries (Osaka, Japan), and Ko143 was from Sigma‐Aldrich (St. Louis, MO). Dulbecco's modified Eagle's medium (DMEM) and fetal bovine serum (FBS) were obtained from Wako Pure Chemical Industries and Invitrogen (Carlsbad, CA), respectively. Mouse monoclonal antibodies for the tag peptides of DYKDDDDK (FLAG) and hemagglutinin (HA) were obtained from Wako Pure Chemical Industries (product numbers of 014‐21881 and 018‐22381, respectively, for the anti‐FLAG and anti‐HA antibodies), and a mouse monoclonal antibody for β‐actin (product number A5441) and horseradish peroxidase‐conjugated goat anti‐mouse IgG (product number A8924) were from Sigma‐Aldrich. All other reagents were of analytical grade and commercially obtained.
+ Open protocol
+ Expand
2

Optimizing Oxidative Stress Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quercetin, protoporphyrin IX (PpIX), dimethyl sulfoxide (DMSO) was purchased from Sigma-Aldrich, USA. Ethanol, superoxide dismutase (SOD), catalase, ethidium bromide, hypoxanthine, diethylenetriaminepentaacetic Acid (DTPA), trifluoroacetic acid, acetonitrile, iron(II) perchlorate, hydrogen peroxide, fluorescein, phosphoric acid, Dulbecco’s phosphate-buffered saline (D-PBS) were purchased from FUJIFILM Wako Pure Chemical Corporation., Japan. 3’-(p-aminophenyl) fluorescein (APF) was purchased from Sekisui Medical Co. Ltd., Japan. Dihydroethidium DHE was purchased from Invitrogen, CA. Compound libraries (Core library; for pilot screening) were provided by drug discovery initiative (DDI), the University of Tokyo (https://www.ddi.u-tokyo.ac.jp/en/). WST-8 was purchased from Dojin Laboratoies, Japan. Xanthine oxidase was purchased from Calbiochem (USA).
+ Open protocol
+ Expand
3

Oxidative Stress and Peptide Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
2′‐Deoxy‐5‐fluorouridine (FUdR), 30% hydrogen peroxide (H2O2), 4% paraformaldehyde (PFA) phosphate buffer solution, L‐ascorbic acid, bovine serum albumin (BSA), ethylenediaminetetraacetic acid disodium (EDTA‐2Na), FeCl3・2H2O, glycerin, hypoxanthine, sodium azide, sodium dodecyl sulfate (SDS), and sodium hypochlorite were purchased from FUJIFILM Wako Pure Chemical Co. Carnosine (Car) and xanthine oxidase were purchased from Sigma‐Aldrich. Aminoguanidine hydrochloride, D‐glucose, monopotassium phosphate (KH2PO4), NaCl, and NaOH were purchased from Kanto Chemical Co. 2‐methyl‐6‐p‐methoxyphenylethynyl‐imidazopyrazinone (MPEC) and β‐mercaptoethanol were purchased from ATTO Co. and Nacalai Tesque Inc., respectively. 2′,7′‐dichlorofluorescein diacetate (H2DCF‐DA; Invitrogen) and dihydroethidium (DHE; FUJIFILM Wako Pure Chemical Co.) were used for ROS visualization. Synthesized Leu–Lys (LK) and Lys–Leu (KL) were purchased from Scrum Inc.
+ Open protocol
+ Expand
4

Authentic Compound Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Authentic compounds were purchased from Wako Chemical Co. (Tokyo, Japan), including glutathione, hypoxanthine, xanthine, inosine, uridine, cytidine, guanine, guanosine, and L-ascorbic acid. All solvents were LC–MS grade (Kanto Chemical, Tokyo, Japan).
+ Open protocol
+ Expand
5

Cultivation of P. falciparum Strains 3D7 and K1

Check if the same lab product or an alternative is used in the 5 most similar protocols
The P. falciparum strains 3D7 and K1 were cultivated in complete medium consisting of the following components: Roswell Park Memorial Institute (RPMI)-1640 (Sigma‒Aldrich, St. Louis, MO, USA), 25 mM HEPES (CAS: 7365-45-9, Sigma‒Aldrich, St. Louis, MO, USA), 0.5% (w/v) AlbuMax™ II (lipid-rich BSA, Gibco, Waltham, MA, USA), 24 mM NaHCO3 (CAS: 144-55-8, Wako, Osaka, Japan), 184 μM hypoxanthine (CAS: 68-94-0, Wako, Osaka, Japan), and 0.025% (v/v) gentamicin (50 mg/mL, CAS: 1403-66-3, Gibco, Waltham, MA, USA) supplemented with 2% washed human O-(+) erythrocytes, provided by the Japanese Red Cross Society, Hokkaido, Japan. The cultures were maintained in an incubator under specific conditions: 37 °C under 5% CO2 and 5% O2. The parasitemia levels were monitored using Giemsa-stained thin blood smears (CAS: 51811-82-6, Merck, Darmstadt, Hesse, Germany). Ethical approval for human blood malaria parasite culture was obtained with permit number #2013-04-3 from the ethical committee of Obihiro University of Agriculture and Veterinary Medicine adhering to the ethical standards for research involving human blood samples.
+ Open protocol
+ Expand
6

Radiolabeled Compounds for Biochemical Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
[3H]Adenine (25.0 Ci/mmol), [3H]hypoxanthine (27.0 Ci/mmol), [3H]thymidine (20.0 Ci/mmol), [3H]uridine (14.7 Ci/mmol), [3H]uracil (42.8 Ci/mmol), [3H]xanthine (12.8 Ci/mmol) and [3H]adenosine (39.2 Ci/mmol) were obtained from Moravek Biochemicals (Brea, CA), [14C]guanine (55 mCi/mmol) was from American Radiolabeled Chemicals (St. Louis, MO), and [14C]ascorbate (8.5 mCi/mmol) was from PerkinElmer Life Sciences (Boston, MA). Adenine, papaverine, and dipyridamole were obtained from Sigma-Aldrich (St. Louis, MO), and hypoxanthine, guanine and nitrobenzylthioinosine were from Wako Pure Chemicals (Osaka, Japan). All other reagents were of analytical grade and commercially obtained.
+ Open protocol
+ Expand
7

Antioxidant Enzyme Assay Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
4-Hydroxy-2,2,6,6-tetramethylpiperidine-N-oxyl (TEMPOL) was from Sigma-Aldrich Japan (Tokyo, Japan). Xanthine oxidase, glutathione reductase (GR), NAD+, NADH, alcohol dehydrogenase from yeast and malate dehydrogenase from yeast were from Oriental Yeast Co., Ltd (Tokyo, Japan). The following were from Wako Pure Chemical Industries (Osaka, Japan): ferricytochrome c (from horse heart), hypoxanthine, cholesterol assay kit (Cholesterol E test), triglyceride assay kit (Triglyceride E test), Tiron, ascorbic acid, and glutathione. Dihydroethidium (DHE) was purchased from Life Technologies Japan Ltd. (Tokyo, Japan).
+ Open protocol
+ Expand
8

Purine Depletion and Supplementation Assay in HEK293T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293T cells were cultured in Dulbecco's modified Eagle's Medium (D6546; Sigma-Aldrich) supplemented with 10% fetal bovine serum (FBS) (S1820-500; Biowest/173012; Sigma-Aldrich), 50 U/ml penicillin, 50 μg/ml streptomycin (15070-063; GIBCO), and 2 mM glutamine (25030-081; GIBCO) in a 5% CO2 incubator (hereafter referred to as normal culture conditions). For purine depletion experiments, cells were cultured in purine-depleted media, which is Dulbecco's modified Eagle's Medium supplemented with 10% dialyzed FBS (SH30079; Hyclone), 50 U/ml penicillin, 50 μg/ml streptomycin, and 2 mM glutamine. In the indicated experiments, cells were cultured with 2 μM methotrexate (135-13573; Wako), 10 μg/ml pepstatin A (4397-v; Peptide Institute), 10 μg/ml E64d (4321-v; Peptide Institute), hypoxanthine (086-03403; Wako), adenine (A0149; Tokyo Chemical Industry), guanine (G0169; Tokyo Chemical Industry), inosine (I4125; Sigma-Aldrich), or inosine 5'-monophosphate disodium salt hydrate (I0036; Tokyo Chemical Industry). Except for the screen, cells lacking de novo purine synthesis were maintained in media supplemented with 100 μM hypoxanthine, and the media were changed before analysis.
+ Open protocol
+ Expand
9

Culturing B. breve MCC1274 with Purines

Check if the same lab product or an alternative is used in the 5 most similar protocols
B. breve MCC1274 was cultured in YC medium supplemented with 200 μM each of adenosine, inosine, hypoxanthine, and xanthine (FUJIFILM Wako Pure Chemical) for 24 h under anaerobic conditions. Then, the culture medium was centrifuged (10,000 × g, 5 min, 4°C), and the supernatant was stored at −20°C until analysis.
+ Open protocol
+ Expand
10

Ozone-Induced Oxidative Probe Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Reagents were obtained from the following suppliers: hydrogen peroxide 30%, iron (II) sulfate heptahydrate, NaClO, and hypoxanthine that were from Wako Pure Chemical Industries Ltd. (Osaka Japan). Xanthine oxidase was obtained from bovine milk and pyrrolidine from SIGMA-ALDRICH, Co (USA). Diethylenetriaminepentaacetic acid (DETAPAC) and NOC-7 were obtained from DOJIN MOLECULAR TECHNOLOGIES, INC. All other chemicals were obtained as reagent-grade.
Probe 1 was donated kindly from Professor K. Koide of University of Pittsburgh [6 ].
Ozone-containing water was prepared by the electrolysis of water (ozone generator: VMC JAPAN). The concentration of standard ozone-containing water was calculated from its absorbance at a wavelength of 254 nm using a molar absorptivity coefficient, ε, of 2950 mol−1Lcm−1 [7 ].
Preparation of probe 1 solution for assay: a solution of probe 1 (12.5 μmol/L) in a mixture of 5% v/v methanol in a 0.5 mmol/L phosphate buffer (pH 3.3) was prepared immediately prior to use.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!