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28 protocols using rotina 420r

1

Rosetta gami Extract Production for ELISA

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Rosetta gami extract for use in ELISA was produced from uninduced pET21a-TRX transformed overnight cultures. Bacteria were harvested at 4,500 rpm, 10 min, 4°C (Rotina 420R, Hettich) and washed 3 times with PBS. The pellet (originating from 200 ml overnight culture) was resuspended in 10 ml 0.5 M urea and sonicated for 15 cycles 20 s on and 30 s off (amplitude 22–26 microns, Soniprep 150 MSE). Bacterial lysates were centrifuged at 4,500 rpm, 10 min, 4°C (Rotina 420R, Hettich) and supernatants saved at −20°C until use.
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2

Extraction and Preparation of Meat Protein

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The samples were prepared according to a previous method (Wang et al., 2022a , Wang et al., 2022b ), with slight modification. After the preparation of four meat pieces, 10 times the volume of buffer A (50 mM KCl-20 mM tris-maleate, pH 7.0) was added to obtain the suspension. The suspension was mixed and homogenized (90,000 rpm) at 4 °C using an Ultra-Turrax homogenizer (T-18, IKA, Germany). After standing for 15 min, the suspension was centrifuged at 8000×g, 4 °C for 5 min (Hettich Rotina 420R, Hettich, Germany) to obtain the precipitate. Further, 10 times the volume of buffer B (0.6 M KCl-20 mM Tris-maleate, pH 7.0) was added to the samples and the mixture was homogenized. The extraction was performed for 1 h before centrifugation (Hettich Rotina 420R, Hettich, Germany) to obtain the supernatant containing MPs (8000×g, 4 °C, 10 min). Finally, the supernatant was washed with four times the volume of precooled (4 °C) deionized water, and the MPs were isolated through centrifugation (6000×g, 10 min). The obtained MPs was dissolved in 0.6 M KCl solution and stirred at 4 °C for 24 h, with pH kept at 7.0 throughout this process. Finally, the concentration was determined using the Biuret method (Wang et al., 2020 ). Based on the protein determination results, the suspensions with protein concentrations of 2, 5, and 10 mg/mL were prepared.
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3

Biofilm Formation Influenced by Hydroxyapatite

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Over-night cultures of S. mutans were harvested by centrifugation (ROTINA 420 R, Hettich Lab Technology, Tuttlingen, Germany), washed in phosphate-buffered saline (PBS; Sigma-Aldrich, St. Louis, MO, USA) and resuspended in 1 mL BHI yielding an optical density (OD) of 1.0 measured at 600 nm by means of a spectrophotometer (Ultrospec 3300 pro, Amersham Biosciences, Amersham, UK). These suspensions were transferred to brand-new glass baffled flasks (Schikane-Kolben, Schott, Mainz, Germany) containing 20 mL BHI with 1% sucrose either alone or in combination with 5% (w/v) HAP or 5% (w/v) silica. The baffled flasks were incubated at 37 °C for a total culture period of 48 h on an orbital shaker (100 rpm), which kept HAP or silica particles dispersed during culture. At baseline, after 24 h and after 48 h, pH was measured by means of a pH meter (HI 2211, HANNA Instruments, Woonsocket, RI, USA) and release of Ca2+ was determined colorimetrically (Calcium assay kit ab102505; Abcam, Cambridge, UK) by measuring OD at 575 nm on a Varioskan® Flash microplate reader (Thermo Fisher Scientific, Waltham, MA, USA).
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4

Antioxidant-rich Herbal Beverage Fermentation

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Firstly, 50 g of thyme or pomegranate peel, as detailed above, was dissolved in water at a ratio of 1:20 (w/v) and incubated at 90 °C for 15 min. The rosemary and echinacea were dissolved in water at a ratio of 1:50 (w/v) and incubated at 90 °C for 1 min. Next, for all beverages, 500 mL of MilliQ water at room temperature was added to the samples, and the bottles were cooled at 30 °C. The prepared beverages were inoculated a rate of 1% of each strain grown for 48 h at 30 °C. The pH was measured before and after fermentation to confirm its decrease (from pH values above 5 to values below 4.4, depending on the beverage) as a result of the fermentation process (Supplementary Table S1).
Selected samples were transferred to 50 mL screw-cap polyethylene centrifuge tubes and centrifuged (Hettich Rotina 420R, Sérézin du Rhône, France) at 3500× g for 2 min to clarify the extracts. The supernatants were transferred to new tubes and pasteurized in a water bath at 85 °C for 10 min. Next, the samples were aseptically stored at −80 °C for further analyses.
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5

Liposome Surface Functionalization with Proteins

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Liposomes were surface functionalized with either InvA497 or bovine serum albumin (BSA; Sigma Aldrich, Steinheim, Germany). A volume of 2 ml liposomal dispersion was incubated overnight with 300 μl of crosslinking agent, consisting of 48 mM EDC/19 mM NHS (EDC: N-(3-dimethylaminopropyl)-Nˊ-ethylcarbodiimide hydrochloride; Sigma Aldrich, Steinheim, Germany; NHS: N-hydroxysuccinimide 99 %; Carbolution Chemical GmbH, Saarbrücken, Germany) in MES buffer (pH6) with gental shaking at room temperature. Liposomes were centrifuged (Rotina 420R; Hettich Zentrifugen, Tuttlingen, Germany) in Centrisart® tubes 300,000 MWCO (Sartorius, Goettingen, Germany) at 3270 g, 4 °C for 30 min to remove excess free reagent followed by three successive washing steps during which the MES buffer was gradually exchanged with phosphate buffer saline (PBS) (Sigma Aldrich, Steinheim, Germany), pH 7.4 . The total volume was then completed to 2.5 ml with PBS. A 300 μl volume of 1 mg/ml InvA497 or BSA in PBS was added and coating process was continued overnight in ice bath with gentle shaking. This was followed by centrifugation and washing steps in Centrisart® tubes 300,000 MWCO to remove unbound protein.
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6

Comprehensive Cardiovascular Biomarker Assessment

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In the morning, the day after the intracoronary imaging procedures, fasting venous blood samples were collected in 5 mL ethylenediamine tetraacetic acid tubes, centrifuged for 20 min in 20 °C at 3000×g (Rotina 420R, Hettich zentrifugen), aliquoted and stored in − 80 °C freezer until miR analyses. Additional blood samples were analyzed for total cholesterol, total triglycerides, LDL cholesterol (LDL-C), HDL cholesterol (HDL-C), lipoprotein (a), Apolipoprotein-B, Apolipoprotein-A1, glycated hemoglobin A1c, hemoglobin, and creatinine by standard in-hospital procedures at the Department of Medical Biochemistry, St. Olavs Hospital. At the time of inclusion, information on anthropometry and CVD risk factors were collected from the hospital medical records. This included sex, age, body mass index (kg·m−2), diabetes mellitus, systolic- and diastolic blood pressure, smoking status, other comorbidities, medications, previous CVD (CAD, stroke, peripheral arterial disease, and/or aortic disease), heredity for CVD [first-degree relative with CVD before the age of 55 years (father) and 65 years (mother)], hyperlipidemia, and medically treated hypertension. The two latter conditions were defined as previously being diagnosed with this condition or not by a general practitioner or in an outpatient clinic before enrollment in the present study.
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7

Liver Oxidative Stress Biomarkers Quantification

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The liver tissues were homogenized in phosphate
buffer saline (PBS)
(40 mM), at pH 7.4 (Kinematica, Lucerne, Switzerland). Beckman L7-65
Ultracentrifuge (Beckman, Fullerton, USA) was used at 15,000g for 20 min, at 4 °C for separation of the supernatant.
Furthermore, the supernatants were subjected for Cu/Zn superoxide
dismutase (SOD) activity, malondialdehyde (MDA), and glutathione (GSH)
content. At 550 nm, the activity of Cu/Zn SOD was determined according
to established protocols,19 (link) while GSH and
MDA content were determined according to the previously described
procedure.22 (link) To extract out the proteinous
content, the supernatant was centrifuged for 15 min at 4000g with 1.0 M metaphosphoric acid (Rotina 420R, Andreas Hettich
GmbH, Tuttlingen, Germany). Finally, a solution of 700 μL of
nicotinamide adenine dinucleotide phosphate in PBS, deproteinized
sample, 25 μL water, 100 μL of DTNB were mixed to a volume
of 1.0 mL. Then, 10 μL of glutathione reductase was added to
the solution and was analyzed at 405 nm for 20 min. For determination
of glutathione in the samples, a series of dilution of glutathione
stock solution were compared to the standard curve.
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8

Encapsulation Efficiency of Liposomes

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In order to determine the encapsulation efficiency (EE), Vivaspin2 centrifugal concentrators with a MWCO of 30,000 (Sartorius AG, Göttingen, Germany) was used to separate the non-encapsulated peptides from the liposomes. Aliquots of 1 mL of both coated and uncoated liposomes were placed in Vivaspin2 centrifugal concentrators and centrifuged two times for 30 min at 4000× g (Rotina 420 R, Hettich GmbH, Tuttlingen, Germany). Experiments were made in triplicate. The concentration of free SP that passed through the Vivaspin2 filter was determined using HPLC analysis with the conditions described above.
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9

RBC Hemolysis Assay for Silica Samples

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RBCs were purified from de-identified fresh human blood. Blood was collected in vacutainer tubes (S-monovette 8.2 mL 9NC; Sarstedt), and RBCs were purified by centrifugation at 300 × g for 10 min (Rotina 420R; Hettich) and washing four times with 0.9% NaCl (Baxter). RBCs were suspended in Dulbecco’s PBS (DPBS) (Gibco) at the final concentration of 5% by volume. Silica samples were heated at 200 °C to inactivate any possible endotoxin or other microbial contaminants, then dispersed at the concentration of 300 cm2/mL in DPBS and sonicated during 2 min in a bath (USC100T; VWR), just before testing. Serial dilutions of the starting dispersion were performed according to the final surface area doses used for experiments. Negative and positive controls consisted in DPBS and 0.1% Triton-X 100 (Sigma-Aldrich) in DPBS, respectively. Particle suspensions were incubated with RBCs on an orbital plate shaker at r.t. for 30 min, and then centrifuged at 300 × g for 10 min. Supernatants were transferred to a new plate, and the absorbance of the hemoglobin released was determined at 540 nm on a UV/vis spectrophotometer (Infinite F200; Tecan).
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10

Volatile Fatty Acid Quantification

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For VFA and BCFA determination, 10 mL of each sample (liquid phase) was mixed with 30 mL of a 16% formic acid solution (1:3, v/v) and was kept at 4 °C for 72 h for precipitation. Then, samples were centrifuged three times at 4000× g for 15 min at 15 °C (Rotina 420R (Hettich Lab Technology, Tuttlingen, Germany)). Another centrifugation at 14000 rpm for 1 h at 4 °C was performed. The supernatant was sampled and stored at −20 °C [40 (link)] until chromatographic analysis as described in Exp. 1. Ammonia N was determined in the same centrifuged sample used for fatty acids after being thawed at room temperature and then diluted 2:13 (v/v) with distilled water (2:13, v/v). Ammonia N was determined via spectrophotometry [50 ].
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