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6 protocols using amersham hybond p 0

1

Western Blot Analysis of HA-Tagged Proteins

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50 mL yeast cultures in S.D. media were harvested and disrupted using acid-washed glass beads [23 (link)]. The cell lysates were separated by SDS-PAGE and proteins were transferred to polyvinylidene fluoride membranes (Amersham Hybond-P 0.45, GE Healthcare Life Sciences, München, Germany). Chemiluminescence detection (ECL Chemostar, Intas Science Imaging Instruments, Göttingen, Germany) was carried out using a monoclonal mouse Anti-HA antibody (1:5000, Roche; cat. no. 11583816001, Mannheim, Germany), a horseradish peroxidase secondary goat anti-mouse antibody (1:5000, Jackson ImmunoResearch/Dianova; cat. no. 115-035-174, Hamburg, Germany), and the Clarity Western ECL substrate (Bio-Rad, Feldkirchen, Germany).
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2

Western Blot Analysis of TPFI

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Cell supernatants were collected from 24-well plates and BCA assays (ThermoFisher Scientific, Madrid, Spain) were performed to calculate protein concentration of samples. Protein concentration variability between samples was low (4.8–5.5 μg/μL for EAhy.926 and 1.3-1.6 μg/μL for HUVEC). Normalization in the western blot was based on the amount of protein loaded. For this purpose, 100 μg (EAhy.926) and 30 μg (HUVEC) of total protein was separated by SDS-PAGE in reducing conditions by electrophoresis in 8% polyacrylamide gels. Gels were transferred onto PVDF membranes (Amersham Hybond P 0.45, GE Healthcare, Barcelona Spain) and blocked 1 hour in 5% w/v non-fat drymilk. Antibody against human TPFI (#ADG72, Sekisui Diagnostics, Rüsselsheim, Germany) was used 1:5,000 dilution and incubated overnight at 4 °C. The secondary antibody labeled with peroxidase (GE Healthcare, Barcelona, Spain) was used 1:10,000. ECL Prime Detection Kit and ImageQuant LAS 4000 Imager (GE Healthcare, Barcelona, Spain) were used for sample detection. Densitometric analyses were performed with ImageJ software (http://rsb.info.nih.gov/ij/). Linearity between the amount of sample and densitometry was assessed (r2 = 0.95). Data were expressed as changes relative to cells transfected with SCR, taken as 100%.
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3

Western Blot Analysis of Aortic Proteins

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Protein lysates were obtained from thoracic aortas of BM miR-146a-/-and BM wt transplanted mice fed with a HFD for 20 weeks. Tissue homogenization was performed using TissueLyser (Qiagen). Normalization was based on the amount of protein loaded. Total protein (20 μg) was separated by SDS-PAGE (8%) in reducing conditions. Gels were transferred onto PVDF membranes (Amersham Hybond P 0.45, GE Healthcare, Barcelona Spain) and blocked for 1 hour in 5% w/v BSA-TBS. Membranes were incubated overnight at 4°C with primary antibodies against human Traf6 (#sc-8409, 1:1,000, Santa Cruz, Heidelberg, Germany), Irak1 (D51G7, 1:1,000, Cell Signalling Technology, Leiden, The Netherlands), and β-actin (AC-15 clone, 1:5,000, Sigma-Aldrich, Madrid, Spain). After washing, membranes were incubated with secondary antibodies labeled with peroxidase (1:10,000, GE Healthcare, Barcelona, Spain). ECL Prime Detection Kit and ImageQuant LAS 4000 Imager (GE Healthcare, Barcelona, Spain) were used for protein detection. Densitometric analyses were performed with ImageJ software (http://rsb.info.nih.gov/ij/).
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4

Aβ Assembly Modulation by TDP-43 in APP/PS1ΔE9 Mice

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Western blot was performed to observe the changes in Aβ assembly after injecting TDP-43 to the APP/PS1ΔE9 mice. The concentration of the extracellular-enriched fraction and Triton-soluble fraction were determined and adjusted to the same protein concentration (48 μg in 20 μL). The samples were mixed with 6x loading buffer and heated in 95 °C for 10 min, then loaded into a 4–15% Tris-glycine gel and resolved at 100 V for 120 min. The separated proteins were transferred to a PVDF membrane (Amersham Hybond P 0.45, GE healthcare, Chicago, Illinois, USA) and blocked with 5% non-fat milk. The mouse monoclonal 6E10 antibody (1:5000, SIG-39320, BioLegend, San Diego, CA, USA) and mouse monoclonal 4G8 antibody (1:5000, SIG-39220, BioLegend, San Diego, CA, USA) were mixed and used for Aβ detection. A mouse monoclonal GAPDH antibody (1:5000, Proteintech, Rosemont, IL, USA) was used for loading control. The secondary antibody used for 6E10/4G8 mixture is goat anti-mouse IgG-HRP (GTX213111-01, Genetex, CA, USA) and for GAPDH is goat anti-rabbit IgG-HRP (GTX213110-01, Genetex, CA, USA). Immobilon Western Chemiluminescent HRP substrate (Merck, Darmstadt, Germany) was used for developing. The detection was carried out with Imagequant LAS4000 system (GE Healthcare, Life sciences, Hungary) and analyzed using ImageJ (NIH, Bethesda, MD, USA).
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5

Western Blot Protein Detection Protocol

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60-80 μg of protein of the cell lysate was loaded onto a 12% gel (SDS-PAGE), and proteins were then transferred from the gel to a polyvinylidene fluoride (PVDF) membrane (Amersham Hybond P 0.45; GE Healthcare Life Sciences, 10600023). The membrane was blocked with 5% skim milk (in Tris buffer saline [TBS], TFS, 28358), followed by sequential application of primary and secondary antibodies as indicated in Table 5. The membrane was intermittently washed with TBST (TBS containing 0.1% Tween20) solution. Chemiluminescence signals were generated using SuperSignal west femto maximum sensitivity substrate (TFS, 34094) and signals were measured using ChemiDoc XRS+ Imaging System (Bio-Rad). The density of protein bands in the blots was quantified using ImageJ2 software.
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6

Western Blotting of LβT2 Cell Lysates

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LβT2 cell lysates were loaded on a 12% SDS-PAGE gel and then were transferred to polyvinylidene fluoride membranes (Amersham Hybond P 0.45, GE Healthcare UK Ltd, Buckinghamshire, UK). After blocking with 5% nonfat milk in Tris-buffered saline and Tween 20, the membranes were probed with primary antibodies against NR4A3 (1:1000 dilution; anti-human NGFI-B gamma mouse monoclonal antibody; Perseus Proteomics Inc., Tokyo, Japan) [14 ], ANXA5 (1:10 000 dilution; polyclonal rabbit sera against rat ANXA5) [15 ], and β-actin (1:2000 dilution; mouse monoclonal sc-47778, Santa Cruz Biotechnology, Santa Cruz, CA) [16 ] at 4°C overnight. Then, the membranes were incubated with an ECL peroxidase-labeled anti-mouse antibody or anti-rabbit antibody (GE Healthcare UK Ltd) [17 , 18 ], which function as a secondary antibody. Immunoreactivity was detected by chemiluminescence with ECL Western blotting detection reagents (GE Healthcare UK Ltd), and blots were scanned using an ImageQuant LAS 4000 system (GE Healthcare UK Ltd).
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