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17 protocols using sr101

1

Staining Brain Slices with SR101

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For SR101 (Invitrogen) staining23 (link), the slices were transferred and incubated in another aCSF-filled incubator for 30 min containing 0.6 μmol/L SR101 at 34°C. Afterwards, the slices were transferred back to standard aCSF at room temperature before the experiments.
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2

Microdialysis Probes in Visual Cortex

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The microdialysis probes were aligned with a stereotaxic manipulator over the visual cortex at a 30° angle. Prior to insertion, probes were continuously perfused with artificial cerebrospinal fluid (aCSF: 144 mM Na+, 1.2 mM Ca2+, 2.7 mM K+, 152 mM Cl, 1.0 mM Mg2+, and 2.0 M PO43− adjusted to pH 7.4 with NaOH) or 10 μM Dexamethasone in aCSF at 0.610 μL/min until the conclusion of the experiment. Flow was confirmed by visual inspection of droplets forming at the outlet line but samples were not collected for analysis. Probes were inserted using a z-axis automated microdrive (MO-81, Narishige, Japan) at 200 μm s−1 for 2700 μm, then retracted 300 μm. Probes were then fixed into position using a blue-light curing dental cement. Then, prior to imaging, 0.1 cc of 1 mg ml−1 sulforhodamine101 (SR101, S-359, Invitrogen, Carlsbad, CA) was injected IV as an optical vascular label (red), and then 0.05 mg ml−1 SR101 was administered IP periodically as needed as the blood vessels became faintly labeled.
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3

SR101 Slice Staining Protocol

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For sulforhodamine 101 (SR101, Invitrogen, New York, NY) staining (Nimmerjahn et al. 2004 (link)), the slices were transferred to a slice-holding basket containing 0.6 μM SR101 in aCSF at 34 °C for 30 min. Then, the basket was transferred back to the normal aCSF at room temperature before the experiment.
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4

Pharmacological modulation of glutamate signaling

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Reagents for ACSF and internal solutions, biocytin, NBQX, BaCl2, and picrotoxin were obtained from Sigma-Aldrich. CNQX, AP-5, DHK, DL-TBOA, TTX, ouabain, and D-serine were obtained from Tocris. L-glutamic acid from BioTrend and SR-101 from Invitrogen. NBQX, CNQX, and DL-TBOA were dissolved in DMSO. picrotoxin was dissolved in EtOH. AP-5, D-serine, TTX, ouabain, and DHK were dissolved in ddH2O.
In both patch-clamp and two-photon imaging experiments, following baseline recordings, drugs were applied in the external solution for at least 15 min prior to recordings. For the double pharmacology imaging experiments (Fig. 9) following baseline recordings, DHK (300 μM) was first applied and recordings were acquired 20 min later. Subsequently, DHK (300 μM) and DL-TBOA (68 μM) were applied for 20 min before recording. In a number of recordings in which we applied much higher doses of DL-TBOA (300 µM), we observed a change in baseline iGluSnFr fluorescence (similar to ref. 18 (link)), a reduced amplitude of the evoked responses and cellular swelling often accompanied by a lateral or Z drift. These experiments had to be excluded, which explains the low n value for this set of experiments (Supplementary Fig. 9).
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5

Labelling retinal ganglion cells for imaging

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OGB-1-labelled GCL cells were targeted with electrodes (5–15 MΩ) subsequent to two-photon recordings. Single cells in the GCL were dye-filled with SR101 (Invitrogen) using the buzz function (100-ms pulse) of the MultiClamp 700B software (Molecular Devices). Pipettes were carefully retracted as soon as the cell began to fill. Approximately 20 min were allowed for the dye to diffuse throughout the cell before imaging started. After recording, an image stack was acquired to document the cell’s morphology, which was then traced semi-automatically using the Simple Neurite Tracer plugin implemented in Fiji. In cases of any warping of the IPL we used the original image stack to correct the traced cells using custom-written scripts in IGOR Pro (for details, see ref. 37 (link)).
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6

Optogenetic Manipulation of Parvalbumin Neurons

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We used viral injections to express Chronos (Klapoetke et al., 2014 (link)) in PV-Cre animals. Mice were anesthetized (isoflurane 1–1.5%) and the cranial window implant removed. We used a stereotaxic injection system (QSI, Stoelting Inc) to deliver 500 nL of a 10:1 mixture of AAV1-hSyn-FLEX-Chronos-GFP (UNC Vector Core Stock) and 100 µM sulforhodamine (SR101, Invitrogen, for visualization) at a depth of 200–400 µm. We made 3 to 4 injections spaced 0.5–1.0 mm apart to cover the visual cortex. After the injections a new cranial window was affixed. Viral expression was monitored over the course of days by imaging GFP fluorescence, and allowed to develop for greater than 4 weeks before electrophysiological recordings.
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7

Intracellular and Extracellular Solutions

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SR101 was purchased from Invitrogen (New York, NY). All other chemicals and salts used in intracellular and extracellular solutions were purchased from Sigma-Aldrich. 100 μM BaCl2 and the 100 μM meclofenamic acid (MFA) were dissolved directly in aCSF.
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8

Meclofenamic Acid and Picrotoxin Protocol

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SR101 was purchased from Invitrogen (New York, NY, USA). All other used chemicals and salts were purchased from Sigma-Aldrich (St. Louis, MO, USA). Meclofenamic acid (MFA) was directly dissolved in aCSF before experiment. 100 mM picrotoxin (PTX) were dissolved in dimethyl sulfoxide (DMSO) and stored in a −20 °C freezer prior to use. The stock solutions were diluted to the final experimental concentration just before each experiment.
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9

Imaging Astrocyte Volume Regulation

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Non-transfected astrocytes and astrocytes transfected with pAQP4b-EGFP or pAQP4d-EGFP were loaded with cytosolic sulphorhodamine 101 dye (SR101; 30 μM; Invitrogen, Carlsbad, CA, USA) for 15 min at 37 °C in 95% air/5% CO2. The cells were then stimulated under either isoosmotic (300 mOsm) or hypoosmotic (200 mOsm) conditions and recorded with a laser confocal microscope (LSM 780, Zeiss, Jena, Germany) using an oil-immersion objective (40×/NA 1.3). Transfected cells were confirmed by Ar laser excitation (488 nm) and emitted light was filtered with a bandpass filter at 493–553 nm. SR101 was excited by a diode-pumped solid-state laser (561 nm) and the emission light was filtered with a bandpass filter at 567–649 nm. Time-series images were recorded every 2 s for 120 s (30 s before and 90 s after hypoosmotic stimulation). Changes in the fluorescence intensity of the cytosolic fluorescent dye were used as an indicator of changes in the cell volume [19 (link),26 (link),30 (link)]. Recordings were analysed in ZEN 2010 software (Zeiss, Jena, Germany) using the mean region of interest tool, which calculates the average fluorescence intensity, as in our previous study [19 (link)]. Detailed analysis and fitting of the data were performed in SigmaPlot 11.0 (SYSTAT, San Jose, CA, USA).
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10

Intracellular Recording Using MFA or BaCl2

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SR101 was purchased from Invitrogen (New York, NY). All other chemicals and salts used in intracellular and extracellular solutions were purchased from Sigma-Aldrich. The 100 μM meclofenamic acid (MFA) or 100 μM BaCl2 was dissolved directly in aCSF.
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