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33 protocols using sc50 camera

1

Embryonic Genotyping and Sexing Protocol

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Female mice were sacrificed between 10.5 and 13.5 DPC and embryos were kept in PBS and dissected. Yolk sac DNA was used for genotyping. Embryos were genotyped using the Pich_F1, Pich_F2, and Pich_R1 primers described in Mouse Genotyping. Embryo gender was determined by genomic PCR of Xist and SRY using the following primers: Xist_F (5′-GCTTTGTTTCAGTTTCTCTGG-3′), Xist_R (5′-ATTCTGGACCTATTGGGA-3′), SRY_F (5′-GCATTTATGGTGTGGTCC-3′), and SRY_R (5′-CCAGTCTTGCCTGTATGTGA-3′). Images were taken with an Olympus SC50 camera (Olympus) and a Leica M125 stereomicroscope (Leica Microsystems) before embryo fixation.
Embryos at 10.5 DPC were obtained by in vitro fertilization of oocytes from superovulated Pich+/−;Trp53+/− females with sperm from Trp53+/− males and transferred to pseudopregnant recipient mothers. These procedures were performed following CARD/Infrafrontier protocols (https://www.infrafrontier.eu/knowledgebase/protocols/cryopreservation-protocols).
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2

Zebrafish Kidney Cell Analysis

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Adult zebrafish kidney cells were prepared in ice-cold phosphate buffered saline supplemented with 2 mM EDTA and 2% (v/v) fetal calf serum and passed through a 40 μm filter. For flow cytometry analysis, samples were analyzed on a FACSCanto II. Dead cells and doublets were removed by gating with lymphoid, erythroid, myeloid and precursor cells identified in a side scatter/forward scatter (SSC/FSC) plot and neutrophils and macrophages via GFP fluorescence using fish on the transgenic Tg(mpx::GFP) and Tg(mpeg1.1::GFP) backgrounds, respectively. Smears of kidney cells and adult blood were prepared using a cytospin and stained with Giemsa prior to differential counting and imaging using a Leica DME stereomicroscope and Olympus SC50 camera.
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3

Embryo Analysis of Roe Deer Reproductive Tract

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The reproductive tract of 225 female roe deer was obtained during regular huntings from September 2015 to January 2016 and September 2016 to January 2017. Ethical approval was neither required nor available as field sampling was performed over the course of regular huntings, where no animals were killed for research purposes. After opening the carcass at the gathering place, the samples were kept on ice until flushing. The average time elapsed between death and uterus removal was 3 h, with a maximum of 4 h. Samples were generally obtained within 1 h after uterus removal. The uterus was freed from connective tissue and flushed with a volume of 2.5 mL phosphate buffered saline (PBS). The embryos were visualised under a stereo microscope (SteREO Discovery Microscope V8, 1:8 Zoom rate, Zeiss), and pictures were taken with the Olympus SC50 camera. The embryo diameter was measured and the embryos were snap frozen in liquid N2 after washing them twice in fresh PBS. The uterine fluid was centrifuged for 10 min at 4°C at 800 × g to pellet any remaining cells. The supernatant was then snap frozen and stored at −80°C until further analysis.
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4

Cytospin and Histological Analysis

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Cytospin preparations of adult blood were stained with Giemsa (Sigma, St. Louis, MO, USA), imaged using a Leica DM E microscope with a 100× oil objective (NA = 1.25) and an Olympus SC50 camera and differential counts performed. Zebrafish that developed lymphocytic leukemia were fixed in formalin, followed by paraffin embedding, sectioning and staining with Hematoxylin and Eosin and imaged using an Olympus BX46 clinical microscope with a UPLFLN (PH) Plan Semi Apochromat (OFN 26.5) and DP22 camera, utilizing Olympus CellSens Entry 3.2 (Build 23706) software.
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5

Histopathological Scoring of Murine Colitis

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Mouse colons were flushed with cold PBS to remove all contents, and the entire colon was rolled into Swiss rolls. The tissues were fixed in 2% PFA for 12 h at 4 °C and then washed in 1x PBS and transferred to 70% ethanol until embedding. Swiss rolls were embedded in the same manner as described above for segments of mouse colon. Paraffin-embedded, PFA fixed tissues were sectioned at 4.5 μm. Tissue sections were de-paraffinized and hematoxylin and eosin stained (Mayer’s Hematoxylin, Thermo Scientific; Eosin 1%, Morphisto, Germany). Histopathological analyses were performed using a semi-quantitative scoring system78 (link) that evaluated the severity of crypt damage and cellular infiltration, epithelial erosion and tissue thickening using a severity score from 0 to 3 (0 = intact, 1 = mild, 2 = moderate, 3 = severe), and those scores were multiplied by a score for percent involvement (0 = 0%, 1 = 1–25%, 2 = 26–50%, 3 = 50–100%). A trained and blinded scientist performed the scoring. Representative images were acquired using an Olympus CKX53 microscope and Olympus SC50 camera.
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6

Differential Cytometric Analysis of Zebrafish Blood and Kidney

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Cytospin preparations were prepared from embryonic and adult blood as well as adult kidney and stained with Giemsa (Sigma), and differential counts performed. These were imaged on a Leica DM E microscope with a 100 × oil objective (NA = 1.25) with an Olympus SC50 camera Alternatively, adult zebrafish kidney cells were prepared in ice-cold phosphate-buffered saline supplemented with 2 mM EDTA and 2% (v/v) fetal calf serum and passaged through a 40 μm sieve and analyzed using a FACSCantoII with cell populations identified in a side-scatter (SSC)/forward-scatter (FSC) plot as described [4 (link)]. Data were analyzed for significance with a Student’s t test.
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7

Nerolidol Treatment on T24 and TCCSUP Cells

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T24 and TCCSUP cells were obtained from the American Type Culture Collection (ATCC) and cultured in Dulbecco’s modified Eagle’s medium (D6429, Sigma-Aldrich) with 10% fetal bovine serum (F0804, Sigma-Aldrich) and 100 U of penicillin/streptomycin (P0781, Sigma-Aldrich) in a humidified incubator at 37 °C in a 5% CO2 atmosphere. Trypsin-EDTA (T4049; Sigma-Aldrich) was used for cell passage and division. For nerolidol treatment, nerolidol was mixed with the complete growth medium to obtain the indicated concentrations. For experiments involving the use of inhibitors, cells were treated with inhibitors dissolved in complete growth medium at the indicated concentrations for 1 h before nerolidol administration: H-89 (50 nM), z-Vad (20 or 40 μM), SB203580 (0.5, or 4 μM), DRN (10 μM), XSC (380 nM), KH7 (3 and 10 μM), and L755507 (50 pM or 600 nM). All chemicals were mixed with complete growth medium and treatments were applied by replacing the existing growth medium to ensure homogenous administration. For each treatment, an appropriate control was used, which was an equivalent amount of vehicle (usually DMSO). Microscopy was performed using an Olympus CHX41 microscope (Olympus Corporation, Tokyo, Japan) and cell photographs were taken using an SC50 camera (Olympus Corporation).
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8

Lung Tissue Histology Protocol

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A segment of the left lung was fixed in Histofix (Histolab) and embedded into paraffin and sectioned (3 µm) with a microtome. The tissue sections were placed on slides (Superfrost Plus; Fisher Scientific) and deparaffinized in serial baths of xylene and ethanol followed by staining using Mayer hematoxylin and 0.2% eosin (Histolab) or picrosirius red staining kit (Abcam, Cambridge, United Kingdom). The stained slides were imaged using an Olympus BX60F microscope with an SC50 camera.
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9

Polarized Microscopy of Organic Samples

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All samples were analyzed by an Olympus BX51 polarized optical microscope coupled to a Linkam hot-stage that uses nitrogen to control the temperature and manages the cooling rate. An Olympus SC50 camera linked to the microscope was employed to observe the samples and take micrographs. Samples were dissolved in acetone or cyclohexane, and drops of the solutions were placed on a glass substrate and dried at room temperature.
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10

Nymph Specimens Collected in Dominican Republic

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The specimens have been collected in the Dominican Republic during a field trip in summer 2021.
Nymphs were preserved in 100% ethanol. Nymphal habitus were photographed using a Canon EOS 6D camera and the Visionary Digital Passport imaging system (formerly available and distributed by Dun Inc., Virginia) and processed with Adobe Photoshop Lightroom and Helicon Focus version 5.3.
Two nymphs were dissected in Cellosolve (2-Ethoxyethanol) with subsequent embedding in Euparal medium and mounting on slides. Fore- and hind wingpads of a submature female nymph were dissected and subimaginal wings examined. Microscopic pictures were taken using an Olympus BX51 microscope coupled with an Olympus SC50 camera; photographs were enhanced with Olympus Stream Basic 2.3.2 stacking software and Adobe Photoshop version 21.2.2.
The material is deposited in the collections of the Museum of zoology, Lausanne (MZL) and the Museo National de Historia Natural "Prof. Eugenio de Jesús Marcano", Santo Domingo, Dominican Republic (MNHNSD).
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