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33 protocols using fluoromount g

1

Immunohistochemical Staining of Drosophila Testes

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Immunohistochemical staining was performed as described previously with a few modifications (Lin et al., 2021 (link)). Drosophila adult testes were dissected in 1 × phosphate buffer saline (PBS) and fixed in 4% paraformaldehyde for 20 min. After washing with PBST (0.3% Triton in 1× PBS) three times, the testes were incubated in a blocking buffer (5% goat serum in 0.1% PBST) for 1 h. Next, the blocking buffer was replaced by primary antibodies mixed in PAT (1% BSA, 0.1% Triton and 0.01% sodium azide in 1× PBS) and the incubation lasted for overnight. Then, the testes were washed three times with 0.1% PBST and incubated in secondary antibodies mixed in 0.1% PBST for 1 h. After washing with 0.1% PBST three times, the tissues were stained with DAPI for 10 min and washed three times before mounting with Fluoromount-G. DAPI (#MBD0015, Sigma-Aldrich, Germany), DCP1 (#9578S, Cell signaling, USA).
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2

Quantifying Apoptosis using Cleaved Caspase-3 IF

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Apoptosis was determined using cleaved caspase 3 IF as previously described [12 (link)]. Briefly 40,000 cells were seeded in 12 well plates on glass coverslips in triplicate. 24 hours later cells were treated with chemotherapeutic agents with or without A69 for 24 hours. After treatment, cells were fixed in 3.7% formaldehyde for 15 minutes and permeabilized in 0.3% Triton X-100 for 15 minutes. Antibodies were diluted in blocking buffer that consisted of 0.2% non-fat dry milk, 2% Bovine Serum Albumin and 0.3% Triton X-100 in phosphate buffered saline (PBS). Primary anti-cleaved caspase 3 rabbit monoclonal antibody (1:400, Cell Signaling Technology, Danvers, MA) was applied to cells for 1 hour at 37°C. Following washes in PBS, samples were incubated in goat-anti-rabbit Alexa Fluor 488 (1:1000, Life Technologies, Carlsbad, CA) and Alexa 555 conjugated Phalloidin (1:200, Life Technologies) to visualize F-actin. Slides were mounted with Fluoromount G with Hoescht (Sigma) to label cell nuclei. The percentage of positive cells was determined for each assay with at least 150 cells being counted per condition using the counting feature on an Evos Xl core microscope. Each assay was run in triplicate and repeated three times. Representative images were taken on Zeiss Axio A1 Microscope with an AxioCam MRc digital camera.
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3

Confocal Microscopy of Antifungal Effects

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For confocal microscopy, a 1 × 106 cells/mL fungal suspension was treated with the same concentrations of nonyl, fluconazole, and amphotericin B in 24-well plates (Kasvi) containing sterile round coverslips. After 96 h of incubation, the plates were centrifuged, the culture medium was gently removed, and the wells were washed with PBS after successive centrifugation steps. A working solution of Calcofluor White (Sigma-Aldrich) was prepared at a concentration of 100 mg/L, and 30 µL of this solution was added to the wells. The plates were then reincubated at 37 °C for 45 min and protected from light. The wells were then washed with sterile PBS, and the plates were centrifuged. Coverslips were carefully removed and poured into 4 μL of Fluoromount-G (Sigma-Aldrich), previously deposited on microscope slides for observation under a confocal microscope, the ZEISS LSM 800 with Airyscan with image capture and processing software ZEN BLUE 2.3 System [20 (link),43 (link)].
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4

Biofilm Staining and Confocal Imaging

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Pre-formed 24-h biofilm formations, generated as described above, were incubated for 45 min at 37°C in a solution of 25 μg/ml CAAF 488 (Concanavalin A conjugated to Alexa Fluor 488, CAAF; Molecular Probes, Inc. PO Box 22010, Eugene, United States) and 10 μg/mL FUN 1 (Molecular Probes) (Martinez and Casadevall, 2005 (link)) generated by combining 4 μl of FUN 1 (10 mM) and 15 μl of CAAF 488 (5 mg/ml) with 3 ml of sterile PBS (Martinez and Casadevall, 2005 (link); Tavares et al., 2019 (link)). Subsequently, the coverslips were washed with distilled water taken from the wells and inverted over 4 μl of Fluoromount-G (Sigma-Aldrich, United States) that was previously deposited on microscope slides for observation under a confocal microscope (LSM 510 META, Zeiss).
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5

Phospho-H2AX Assay in Cells

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40,000 cells were plated on glass coverslips in a 12 well plate in triplicate and 24 hours later cells were treated as described above. After treatment, cells were fixed in 3.7% formaldehyde for 15 minutes and permeabilized in 0.3% Triton X-100 for 15 minutes. Antibodies were diluted in blocking buffer that consisted of 0.2% non-fat dry milk, 2% Bovine Serum Albumin and 0.3% Triton X-100 in phosphate buffered saline (PBS). Primary anti-phospho H2AX (1:650, Millipore) was applied to cells for 1 hour at 37 °C. Following washes in PBS, samples were incubated in goat-anti-rabbit Alexa Fluor 488 (1:1000, Life Technologies) and Alexa 555 conjugated Phalloidin (1:200, Life Technologies) to visualize F-actin. Slides were mounted with Fluoromount G with Hoescht (Sigma) to label cell nuclei. The percentage of positive cells was determined for each assay with at least 300 cells being counted per condition using the counting feature on an Evos Xl core microscope. Each assay was run in triplicate and repeated three times. Representative images were taken on Zeiss Axio A1 Microscope with an AxioCam MRc digital camera.
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6

Evaluation of Cell Wall Damage by 2-Chalcone

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Confocal microscopy was used to evaluate the damage to the cell wall caused by 2-chalcone, using fluorochrome Calcofluor White (Thermo Fisher Scientific) and T. rubrum ATCC 28189. Fungal suspensions were prepared at a concentration of 1 × 106 cells/mL and added to 24-well plates containing sterile coverslips, along with sub-inhibitory doses of 2-chalcone (7.8 mg/L). After the incubation period (35°C, for 96 hours), the supernatant was removed and the coverslips were washed with PBS. The coverslips were covered with Calcofluor White solution (100 mg/L), and the plates were incubated again at 37°C, for 45 minutes, protected from light. Then, the coverslips were washed with PBS, removed from the wells, and mounted on 4 μL of Fluoromount-G (Sigma-Aldrich), which was previously deposited on microscopic slides. The slides were then observed using a confocal microscope (Carl Zeiss LSM 800 with Airyscan) with an image capture and processing program (Software ZEN BLUE 2.3 System) at the Faculty of Dentistry, UNESP-Araraquara, Brazil (Curcio et al., 2017 (link); Oliveira et al., 2020 (link)).
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7

Biofilm Visualization via Confocal Microscopy

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Confocal microscopy was performed according to Martinez and Casadevall, 2005 (link). Mature biofilms were incubated for 45 min at 37°C in a solution of CAAF 488 (Concanavalin A conjugated to Alexa Fluor 488, CAAF; Molecular Probes, USA) and FUN 1 (Molecular Probes, USA). Thus, 4 μL of FUN 1 (10 mM) and 15 μL of CAAF 488 (5 mg/mL) were added to 3 mL of sterile PBS to obtain 10 μg/mL FUN 1 and 25 μg/mL CAAF. Subsequently, the coverslips were washed with distilled water taken from the wells and inverted over 4 μL of Fluoromount-G (Sigma–Aldrich, USA) that was previously deposited on microscope slides for observation under confocal microscopy (LSM 510 META, Zeiss). These trials were conducted in collaboration with the Oswaldo Cruz Institute in Rio de Janeiro, Department of Cell Biology, under the coordination of Professor Dr. Marcelo Machado Pelajo.
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8

Multicolor Immunofluorescence Staining Protocol

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Immunofluorescence staining of specimens was performed by incubation for 1 h with blocking reagent (PBS, 1% BSA, 5% goat serum, 0.2% Triton X-100), 1 h incubation of primary antibody diluted in antibody solution (TBS [0.05 M, pH 7.2-7.4], 1% BSA, 0.5% Triton X-100) and 1 h incubation of secondary antibody diluted in antibody solution mixed with DAPI (1:10,000). After every step specimens were rinsed thrice with PBS. Samples were mounted with Fluoromount-G (Sigma-Aldrich) and dried over night at room temperature. Stained specimens were studied with Zeiss Axio Imager.Z1 (Carl Zeiss Goettingen) and filter sets 38HE, 43, 49 and 50. Primary antibodies were rabbit-anti-human Prox1 (Relia Tech) at a 1:500 dilution, mouse anti-human HLA A,B,C (BioLegend) at 1:200 dilution and mouse anti-Mep21 (chick CD34 homolog; M. Williams, AbLab) at dilution of 1:100. Secondary antibodies (Invitrogen) were Alexa Fluor® 594 goat anti-mouse IgG (H + L), Alexa Fluor® 488 goat anti-rabbit IgG (H + L), Alexa Fluor® 660 goat anti-rabbit IgG (H + L), highly cross-adsorbed; Alexa Fluor® 594 goat anti-mouse IgG2a (γ2a); Alexa Fluor® 488 goat anti-mouse IgG1 (γ1); at a dilution of 1:200 in antibody solution.
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9

Multimodal Analysis of Cerebral Tissues

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Mice were euthanized and cerebral samples fixed as in ref. 35 (link). Tissues were cryoprotected in sucrose 30% in PBS at 4 °C for 24 h and embedded in OCT compound (Tissue-Tek) prior to −80 °C storage. Thirty-micrometer coronal slices were obtained with a cryostat (Leica) and stored at −80 °C until use. RNAscope 2.5 Brown (ACD) protocol was used to detect Vegfa (ACD probe 436961 Vegfa01), Plaur (ACD probe 48731 Plaur), or Psen1 (ACD probe 451011 Psen1) mRNAs according to the manufacturer’s instructions for frozen tissue, using a HybEZ oven (ACD). Subsequent immunostaining was performed for microglia (IBA1, 1:200), astrocytes (GFAP, 1:1:500), EC (IB4; 1:50), Thio-S, and nuclear staining (DAPI). After RNAscope 2.5 Brown protocol, slices were incubated for 10 min in PBS–0.3% Triton X-100 (v/v) and washed in PBS. Antibodies were prepared in PBS–0.05% Triton X-100, 2% normal goat serum (Gibco) and used to incubate the samples overnight at 4 °C. After several PBS washes, slices were incubated with anti-rabbit conjugated with Alexa-588 or 647 (Invitrogen, 1:400) for 1 h at room temperature. Several washes with PBS, Thio-S (0.005% in PBS; 8 min), and DAPI (Sigma, 1:1000; 5 min) were the final steps before mounting with Fluoromount-G.
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10

Viral Protein Detection Immunostaining

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Antibodies produced in the laboratory were used for detection of viral proteins NS2 (guinea pig, mouse or rabbit), NS3 (rabbit), VP5 (guinea pig), and VP6 (mouse or rabbit). Hoechst 33342 and Alexa 488-, 546- and 633-conjugated secondary antibodies were purchased from Life Technologies (Thermo Fisher Scientific, Waltham, MA, USA). Alkaline phosphatase-conjugated goat anti-mouse, anti-guinea pig, and anti-rabbit polyclonal antibodies, as well as paraformaldehyde (PFA), Fluoromount G, Bovine Serum Albumin (BSA), saponin, and Triton X-100 were purchased from Sigma-Aldrich (St. Louis, MI, USA). Mounting medium for structured illumination microscopy (SIM) sample preparation was purchased from Electron Microscopy Sciences (Hatfield, PA, USA).
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