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17 protocols using sk hep 1

1

HCC Cell Lines Culture Protocol

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Human HCC cell lines MHCC-97H (Zhong Qiao Xin Zhou Biotechnology Co., Ltd, China), PLC/PRF/5 (Hongbo Biotechnology, China), HCCLM3, SK-Hep1, and mouse HCC cell line (Procell, China) were cultured in DMEM containing high glucose (Biological Industries, Israel) with 10% fetal bovine serum (Biological Industries, Israel) at 37 °C in a humidified atmosphere containing 5% CO2. 100 mg/mL penicillin G and 50 μg/mL streptomycin (Biological Industries, Israel) were added. All cell lines were identified by STR and mycoplasma tests and all were used within 3 months after thawing early passage cells.
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2

Knockdown of NYFA in HCC Cell Lines

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HCC cell lines (SK-Hep-1 and Hep3B) were purchased from Procell (Wuhan, China). Cells were cultured following the recommended conditions according to the providers. Cells were grown in a humidified incubator with 5% CO2 at 37°C. To knockdown NYFA, lentivirus (pLKO.1-puro) carrying NFYA shRNA sequences were generated (shNFYA#1, 5′-TGGTGTCACTGCTGTGCAGTT-3′, shNFYA#2, 5′-CGAGCTAAACTAGAGGCAGAA-3′, and shNFYA#3, 5′-CCATCGTCTATCAACCAGTTA-3′). The scramble sequence (scr.) (5′-CAACAAGATGAAGAGCACCAA-3′) that does not target any gene served as the negative control. Among the 3 shRNAs, shNFYA#1 only targets NFYAv1, while the rest target both NFYAv1 and NFYAv2. Lentiviruses were produced by co-transfecting the lentiviral particles and packaging plasmids (psPAX2 and pMD2.G) into the HEK293T cells, following protocols described previously [18 (link)]. Transfection was performed using Lipofectamine 3000 Reagent (Thermo Fisher Scientific, Waltham, MA, USA). The viral supernatant was collected 48 h after transfection, filtered through a 0.45-μm filter, and stored at −80°C before further use. SK-Hep-1 and Hep3B cells were infected with lentivirus at a multiplicity of infection (MOI) of 10.
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3

Cultivation of Liver Cancer and Kidney Cells

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The human liver cancer cell lines, including HepG2 and SK-Hep1 were obtained from the Institute of Cell Biology, Procell (Wuhan, China). The human embryonic kidney 293T (HEK 293T) cells also purchased from the Procell company(Wuhan, China). Specifically, HepG2 and HEK 293T cells were cultivated with high glucose medium, DMEM (Hyclone, Logan, USA), while SK-Hep1 cells were maintained in MEM (Hyclone, Logan, USA), supplemented with 10% fetal bovine serum (Gibco, Life Technologies, USA) and 1% penicillin-streptomycin (Hyclone, Logan, USA). The culture medium was changed every 48 h.
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4

Lentiviral Delivery of SGOL2 and MAD2 in HCC Cells

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The HCC cell lines SK-HEP-1 and HEP3B were purchased from Procell (Wuhan, China). All cells were cultured in DMEM (Gibco) supplemented with 10% fetal bovine serum (Gibco), 1% streptomycin, and penicillin. Cells were transfected with lentivirus or plasmid purchased from Shanghai Genomeditech (Shanghai, China) and verified by DNA sequencing. Lentiviruses containing shNC (negative control, NC) and shSGOL2 were constructed using the vector pGMLV-SC5. The shRNA sequence used to target SGOL2 was as follows: 5′-GGTCAGAATTCCCTAACTTGT-3′. The pGMLV-SGOL2 plasmid contained the SGOL2 coding sequence, and the pGMLV-MAD2 plasmid contained the MAD2 coding sequence. For plasmid transfection, SK-HEP-1 and HEP3B cells were seeded in 12-well plates and then transfected with plasmids (4 mg per well) using Lipofectamine 2000 Reagent (Invitrogen) according to the protocols. Cells were harvested for analysis after 48 h.
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5

Cell Line Authentication Workflow

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All HCC cell lines were authenticated by STR profiles. HepG2 and SK-Hep-1 cell lines were authenticated by Procell Life Science & Technology Co, Ltd (Wuhan, China). Genomic DNA was extracted from HCC cells (1 × 106) using PureLink Genomic DNA Mini Kit (Life K182001, USA), which was further amplified using PowerPlex®18D System (Promega DC1802, USA), and sequenced by ABI3500 Genetic Analyzer (Life3500, USA). Hep3B cell lines were authenticated by BeNa Culture Collection (Beijing, China). Amplified genomic DNA was sequenced by ABI3730 XL Genetic Analyzer.
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6

Hepatoma Cell Lines for Research

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The human hepatoma cell lines, HepG2, Hep3B and SK-Hep-1 were purchased from Procell (Wuhan, China). The mice hepatoma cell lines, H22 and Hepa1–6 were purchased from the China Center for Type Culture Collection (Wuhan, China). All the cell lines were maintained in Dulbecco’s Modified Eagle Medium (DMEM)-high glucose supplemented with 12% FBS in the presence of 1% penicillin/streptomycin at 37 °C under the atmosphere of 95% air and 5% CO2. The cell lines were identified by STR profiling and relative information is available in supplementary files.
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7

Cell Line Culture and Transfection Protocol

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For cell culture, HEK-293T and Jurkat cell lines was obtained from Haixing Biosciences (Suzhou, Jiangsu, China). The hepatocellular carcinoma cell lines (HepG2 and SK-Hep1) were obtained from Procell Life Science & Technology (Wuhan, Hubei, China). HEK-293T and SK-Hep1 cells were cultured in Dulbecco's Modified Eagle Medium (DMEM, Meilunbio, China) with 10% Fetal Bovine Serum (FBS, Standard Quality, OriCell, China). Jurkat cells were cultured in Roswell Park Memorial Institute-1640 (RPMI-1640, Meilunbio, China) with 10% Fetal Bovine Serum (FBS, Standard Quality, OriCell, China). HepG2 cells were cultured in Minimum Essential Medium (MEM, Meilunbio, China) with 10% Fetal Bovine Serum (Standard Quality, OriCell, China). All cells were grown at 37 °C with 5% CO2. For transfection, cells were transiently transfected with plasmid, siRNA, and shRNA using Lipo6000 Transfection Reagent (Beyotime, Shanghai, China) according to the manufacturer's protocol. For lentivirus infection, lentivirus containing pLVX-BCLAF1-Puro, pLVX-shBCLAF1-Puro, pLVX-SPOP-Puro, pLVX-shSPOP-Puro, and corresponding Control group lentivirus were purchased from Obio Technology (Shanghai, China) and were used to infect HepG2 and SK-Hep1 cells according to the manufacturer's protocol. Infected cells were then subjected to puromycin selection (5 μg/mL), and stable transfection of cells was confirmed by western blot.
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8

Characterizing SK-HEP-1 Liver Cancer Cell Lines

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The human liver cancer cells SK-HEP-1 was obtained from the Procell Life Science & Technology Co., Ltd (Wuhan, China) and was authenticated through STR genotyping. The cell lines were tested periodically for mycoplasma contamination during the experiment and were confirmed negative. Cells were maintained in Dulbecco’s Modified Eagle Medium (DMEM, Gibco, CA, USA) supplemented with 10% fetal bovine serum (FBS, Gibco, CA, USA) and 1% penicillin–streptomycin solution (Beyotime, Shanghai, China).
4MOD was purchased from Shanghai Yuanye Biotechnology Co., Ltd. (Shanghai, China). In animal experiments, 0.25% polyoxyl castor oil (Yuanye, Shanghai, China) and 0.25% EtOH were used to dissolve 4MOD. A rabbit polyclonal antibody anti-GADD45G was obtained from Bioss (Beijing, China).
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9

Culturing Human Liver Cell Lines

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Human hepatocytes (WRL68 cells) and HCC cells (HepG2, SK-Hep-1, Huh7, and SMMC772) were obtained from the American Type Culture Collection (Manassas, VA, USA). WRL68, SK-Hep-1, and HepG2 cells were cultured in minimum essential medium (Procell, Wuhan, China, PM150410) supplemented with 10% fetal bovine serum (FBS, HyClone, USA, SH30396), while SMMC7721 and Huh7 cells were, respectively, cultured in RPMI-1640 medium and DMEM (Procell, PM150110B) supplemented with 10% FBS.
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10

Liver Cell Line Culture and Transfection

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The human normal liver cell line (L-02) and liver cancer cell lines (Huh7, HepG2, Hep3B, SMMC-7721, and SK-Hep-1) were purchased from Procell (Wuhan, China). L-02 and SMMC-7721 cells were maintained in RPMI 1640 (#11875119, Thermo Fisher, USA) supplemented with 5% FBS (#12303C, Sigma-Aldrich, USA) and 1% penicillin/streptomycin (#SV30010, GE Healthcare, USA). The remaining cells were cultured in DMEM (#10313021, Thermo Fisher, USA) containing 10% FBS and 1% penicillin/streptomycin. Cells were all incubated in a humidified 5% CO2 incubator at 37°C.
HepG2 cells were transfected with miR-10b-5p mimics, mimics NC (GenePharma, China), oe-NC, or oe-SLC38A2 vector (HonorGene, China). SK-Hep-1 cells were transfected with miR-10b-5p inhibitors and inhibitor NC (GenePharma, China) using Lipofectamine 2000 (#11668019, Thermo Fisher, USA) according to the manufacturer’s guidelines. To induce apoptosis, SK-Hep-1 and HepG2 cells were treated with the apoptosis inducer staurosporine (STS, 5 μM, #S1421, Selleck, USA) for 12 h.
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