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10 protocols using sz61 dissecting microscope

1

Multimodal Imaging of Embryonic Samples

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Live embryos or in situ hybridization stainings were imaged using an Olympus SZ61 dissecting microscope with a high-resolution digital camera (model S97809, Olympus America) and Picture Frame 3.0 software (Optronics).
Semi-thin sections and flat-mounted embryos from Alcian blue staining were imaged using a Zeiss Axioskop2 plus microscope with a Zeiss AxioCam MRc camera and Zeiss AxioVision Rel. 4.6 software.
Live embryos, whole-mount and sections immunohistochemistry were visualized using an inverted Leica Sp2 AOBS confocal microscope using either 40x or 63x oil-immersion objective. For wholemount, embryos were embedded in 1% low-melt agarose (BP165-25, Fisher) prior to imaging. Images were acquired using Leica software.
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2

Investigating A. actinomycetemcomitans Infection in Mice

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Eight-week-old SK1 KO mice (n=20) and WT mice (n=20) were injected with either A. actinomycetemcomitans (2×105 CFU, 2μL, n=10) or PBS containing 5% glycerol (2μL, n=10) at both sides of the palatal gingival rugae near the first maxillary molar using an Olympus SZ61 dissecting microscope (Olympus, Center Valley, PA, USA) three times per week for four weeks. All the mice were euthanized at the end of four weeks, two days after the last injection of either A. actinomycetemcomitans or PBS. The animal periodontal gingival tissues were harvested from the left side for S1P analysis. The left side maxillae, the right side of animal maxillae and adjacent soft tissues were fixed in formalin. Blood was collected from the heart of all animals after animal euthanasia.
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3

Lonicera praeflorens Fungal Isolation

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Leaf samples were collected from growing Lonicera praeflorens in August 2014, from Lesser Khingan Mountains in Heilongjiang province, Yichun, Wuyiling forestry station. Leaf samples were dried with absorbent paper in herbarium press, and studied directly under an Olympus SZ 61 dissecting microscope after preliminary incubation in a moist chamber. Microscopic observations of ascomatal contents were carried out from material mounted in water. Photomicrographs were taken on a Nikon Eclipse E600 Microscope fitted with a Nikon Digital Sight DS FI1 digital camera and processed with NIS-Elements F 3.2 software. Measurements of asci, hamathecial hyphae and ascospores were made from water mounts.
Isolations were made from single ascospores and grown on 2% water agar (WA) (Biolab, S.A.), and subsequently transferred to malt extract agar (MEA) with sterilized pine needles. Isolates were placed at ambient temperatures (about 26–28 °C) in the dark condition for establishing colony characteristics. Fungal isolates and herbarium specimens have been deposited at Beijing Forestry University (BJFU) with duplicates in the Mycological Herbarium of the Institute of Microbiology, Chinese Academy of Sciences (HMAS).
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4

Imaging Techniques for Microcotyledons

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Most of the individuals were observed under a SZ61 dissecting microscope (Olympus, Tokyo, Japan), and the images were taken by an OM-D E-M10 digital camera (Olympus, Tokyo, Japan). For smaller samples, a MZ16 stereomicroscope (Leica Microsystems GmbH, Wetzlar, Germany) was also used. For samples large enough for observation with the naked eye, pictures were taken by a Ricoh WG-4 camera (Ricoh, Tokyo, Japan). To image the basal part of the cells in the microcotyledons in the individuals treated with cytokinin in the anisocotylous stage, the individuals were fixed with 4% PFA with 15% DMSO and 0.1% Tween-20 at 18 days after treatment (DAT). After more than 1 day of the fixation, the sample was immersed in 1% (v/v) calcofluor white stain (Sigma-Aldrich, St. Louis, MO, United States) in ClearSee solution (Kurihara et al., 2015 (link)) for more than overnight and observed with a Fluoview FV10i confocal microscope (Olympus, Tokyo, Japan).
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5

Fungal Isolation from Dicot Seeds and Grass

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Fungal specimens occurring on seeds of dicot plants and the leaf sheath of an unknown panicoid grass were collected from Ban Phaothai community forest and Khao Yai National Park, Thailand. The specimens were collected carefully so as not to damage either host or stipe, and were placed in small plastic boxes before returning to the laboratory for isolation. The protocol for the isolation from stromata containing mature perithecia followed previous studies (Luangsa-ard et al. 2018 (link), Mongkolsamrit et al. 2018 (link)). Ascospores were discharged on potato dextrose agar (PDA; freshly diced potato 200 g, dextrose 20 g, agar 15 g, in 1 L distilled water) and placed in a plastic box with moist tissue paper overnight to create a humid chamber with 99 % humidity at 25 °C. The following morning, plates were examined with an Olympus SZ61 dissecting microscope to observe discharged ascospores that were then transferred to fresh PDA plates. Pure cultures were deposited at the BIOTEC Culture Collection (BCC), National Center for Genetic Engineering and Biotechnology, Thailand. Specimens were dried in an electric food dryer (50–55 °C) overnight and stored in plastic boxes before storage at the BIOTEC Bangkok Fungarium (BBH), National Biobank of Thailand.
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6

Isolation and Culture of Inner Ear Cells

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The mice were anesthetized with ketamine hydrochloride (100 mg/kg, intramuscular) and 2% xylazine hydrochloride (10 mg/kg, Abbott Laboratories, USA). The auditory bullae was rapidly removed and placed in a Petri dish filled with cold, fresh artificial perilymph solution. The surgery was performed under sterile conditions. The vestibular sacculus, utriculus, and ampullae of the semicircular canal tissue were gently extracted and placed in a cold artificial perilymph solution containing 125 mmol/L NaCl, 3.5 mmol/L KCl, 1.3 mmol/L CaCl2, 1.5 mmol/L MgCl2, 0.51 mmol/L NaH2PO4, 10 mmol/L Hepes, and 5 mmol/L glucose at pH 7.4 with osmolarity adjusted to 310 mmol/kg. Otoliths were gently removed with Dumont tweezers (110 mm, 0.1*0.06 mm tip) and a Tungsten dissecting probe (50 mm, 0.5 mm diameter rod). The tissue was torn into pieces as small as possible under sterile conditions with fine ophthalmic tweezers under an Olympus SZ61 dissecting microscope using the method described by Neng et al. (Neng et al., 2013b (link)). After the tiny fragments of tissue resettled by gravity, they were repositioned to uniform density with a needle (50 mm, 0.5 mm diameter rod). The tiny fragments were then selectively cultured in one of three specific growth media, each specifically formulated to support the growth of either ECs, PCs, or PVM/Ms.
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7

Fungal Diversity from Yunnan Woody Hosts

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Specimens were collected from the dead wood of Hypericummonogynum L. (Hypericaceae) and Rubusparvifolius L. (Rosaceae) in Zhaotong, Yunnan, China, during autumn. The local environment in Zhaotong features Poaceae as the most abundant tree species and a typical plateau vegetation with a three-dimensional monsoon climate at a maximum elevation of ~4000 m (Pei 2022 ). Samples were taken to the laboratory in plastic Ziplock bags for observation and examination. Fungal specimens were rehydrated with tap water and examined using an Olympus SZ-61 dissecting microscope. Single spore isolation of both ascospores and conidia was conducted, and germinated spores were processed by following the methods described in Senanayake et al. (2020) (link). Pure cultures were incubated at 26 °C for two weeks. The living cultures were deposited in the
Kunming Institute of Botany Culture Collection (KUNCC),
and duplicates were maintained in the
China General Microbiological Culture Collection Center (CGMCC).
Dried herbarium specimens (at room temperature) were deposited in the herbarium of the
Kunming Institute of Botany Academia Sinica (HKAS).
The Index Fungorum and Faces of fungi (FoF) numbers were obtained for the new taxa (Jayasiri et al. 2015 (link); Index Fungorum 2023 ). Data from the Greater Mekong Subregion are deposited to the GMS database (Chaiwan et al. 2021 (link)).
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8

Alveolar Bone Loss Quantification

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To determine alveolar bone loss, the maxillae were hemisected, mechanically defleshed and exposed overnight to 3% hydrogen peroxide. They were then treated for 5 min with 1% sodium hypochlorite and then stained with methylene blue dye (Fisher Scientific Company, Fair Lawn, New Jersey) in order to delineate the cemento-enamel junction. The jaws were mounted in utility wax, and the lingual surfaces of the molars were photographed with 10X magnification using an Olympus (SZ61) dissecting microscope (Olympus, Center Valley, PA). The images were digitalized [33 (link)] and printed on A4 paper, and bone loss around the three molars was measured at 12 sites by two different examiners. Results were presented in millimeters, and the significance in bone loss was calculated by comparing bone loss means of the control group with those of the infected diabetic and non-diabetic group of WT and LFKO−/− mice using one-way analysis of variance (ANOVA) [38 (link)].
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9

Embryonic Malformation and Cardiac Phenotypes

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Following injection, the malformation rate and lethality at 24, 48, 72 and 96 hpf, and the hatch rate at 72 hpf were measured with an Olympus SZ61 dissecting microscope as previously described (25 (link),26 (link)). The cardiac phenotypes of the embryos at 48 and 72 hpf were observed. Cardiac-specific phenotypes were imaged with a digital camera (Olympus DP71; Olympus Corporation). Adobe Photoshop CS5 (Adobe Systems, Inc.) was used to process the digital images.
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10

In Situ Hybridization Visualization

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cDNA sequences were amplified using primers for target genes. Amplified fragments were cloned into the pZErO-2 vector. Templates for probe synthesis were amplified by PCR using M13 forward (5′-GTAAAACGACGGCCAGT-3′) and M13 reverse (5′-CAGGAAACAGCTATGAC-3′) primers. Using the templates, we prepared DIG-labelled antisense and sense probes with SP6 or T7 polymerases (Roche, Basel, Switzerland) using DIG RNA Labeling Mix (Roche). Whole-mount in situ hybridisation (WISH) was performed as described previously27 (link),36 (link). For the WISH, we used embryos at the heart stage and plants at the anisocotyledonous stage in which GM and BM were evident and reproductive stage in which an inflorescence was visible. These were immersed in the fixative solution (4% (w/v) paraformaldehyde with 15% (v/v) dimethyl sulfoxide in phosphate-buffered saline with 0.1% (v/v) Tween-20) for 1 h at room temperature. DIG was detected using a DIG Detection Kit (Roche) with anti-digoxigenin antibody (Roche). Samples were visualised using a MZ16F stereomicroscope (Leica Microsystems, Wetzlar, Germany) or an OM-D E-M10 digital camera (Olympus, Tokyo, Japan) with a SZ61 dissecting microscope (Olympus).
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