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5 protocols using mirna cdna synthesis kit with poly a polymerase tailing

1

Quantitative Analysis of miR-30e-5p and mRNA in HCC

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RNA was extracted from tissues and cells by TRIzol reagent (Biosharp, China). The concentration and quality of the total RNA were examined using a Nanodrop 2000 Spectrophotometer. The concentration was between 800 ng/μl and 2500 ng/μl, with the A260/280 between 1.8 and 2.0. MicroRNA reverse transcription was performed using a miRNA cDNA Synthesis Kit with Poly (A) Polymerase Tailing (abm, Canada). The mRNA was reverse-transcribed with PrimeScript RT Master Mix (Takara, Japan). The miR-30e-5p relative expression in HCC tissue was calculated as log2 (2-ΔΔCT) based on the threshold cycle and normalized to U6 expression. The mRNA relative expression was calculated as 2-ΔΔCT based on the threshold cycle and normalized to β-actin expression. RT-qPCR was performed on a Bio-Rad iQ5 instrument using SYBR green mix (Toyobo, Japan).
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2

Serum miRNA Isolation and cDNA Synthesis

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The sera obtained were treated with 1/5 of QIAzol, and miRNA isolation was performed using a miRNAs’ Serum/Plasma Kit (Qiagen cat: 217184 Hilden, Germany). The obtained miRNAs were evaluated by spectrophotometric measurements and stored at −20°C. After the isolation, miRNAs were converted to cDNA using an ABM miRNA cDNA Synthesis Kit with poly(A) polymerase tailing (ABM cat: G903 Richmond, Canada).
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3

RNA Extraction and RT-qPCR Analysis

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Total RNA from the tissue and cells was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA) according to the manufacturer’s instruction. A total of 2 μg RNA of miRNA and 5 μg RNA of mRNA was reverse transcribed to cDNA using a miRNA cDNA Synthesis Kit with Poly (A) Polymerase Tailing (abm, Canada) and PrimeScript™ RT reagent Kit with gDNA Eraser (Takara, Dalian, China), respectively. The expression of miRNAs and mRNAs was analyzed by RT-qPCR system (Roche Diagnostics, Basel, Switzerland) using SYBR Premix Ex Taq™ (TaKaRa, Dalian, China). The primers for RT-qPCR are presented in Table S2. GAPDH/β-actin and U6 snRNA were used as the endogenous controls for mRNA and miRNA RT-qPCR, respectively. The 2-△△Ct method was used to calculate the relative fold changes in the RNAs.
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4

Quantitative Analysis of miRNA Expression

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Total RNA was extracted from tissues and cells using TRIzol reagent (Invitrogen, Carlsbad, CA, USA). The reverse transcription of mRNA was performed using PrimeScript RT reagent Kit with gDNA Eraser (Takara, Tokyo, Japan). Quantitative real-time PCR was performed using a standard protocol from the SYBR Green PCR kit (Toyobo, Osaka, Japan) on a Biorad-CFX96 thermal cycler (Hercules, USA). GAPDH was used as an internal control. Each sample was analyzed in triplicate. Primers specific to miR-125b-5p and RNU6B were purchased from TsingKe (Beijing, China). For miRNA detectio, 1 μg of total RNA was reverse transcribed using a miRNA cDNA Synthesis Kit with Poly(A) Polymerase Tailing (ABM, Peterborough, Canada). Data were analysed according to the 2-ΔCq (Comparative Cq) method. The primers used in this study are presented in Additional file 1: Table S1.
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5

Quantification of Liver miR-33 Expression

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Total RNA was isolated from the liver tissues using Ribo Ex (Geneall Biotechnology Co., Ltd., Korea). Complementary DNA (cDNA) was synthesized from 4 μg of isolated RNA using a Moloney Murine Leukemia Virus (M-MLV) reverse transcriptase (Bioneer Co., Korea). An AccuPower 2X Greenstar qPCR MasterMix (-ROX Dye) (Bioneer Co., Korea) and a fluorometric thermal cycler (Corbett Research, Australia) were used for quantitative real-time polymerase chain reaction (qRT-PCR). Primers used for qRT-PCR are described in the supplementary Table 1. β-actin was used as a reference gene for normalization and the results were relatively quantified using the ΔΔCt method (24 (link)) and expressed as a fold-difference compared with the HC group.
The miR-33 expression was measured as demonstrated before (25 (link)). cDNA was synthesized by using a miRNA cDNA Synthesis Kit with Poly (A) Polymerase Tailing (ABM Inc., Canada) and amplified using the EvaGreen miRNA qPCR Master Mix (ABM Inc.). The miR-33 expression was normalized to U6 snRNA using the 2−ΔΔCt method.
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