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13 protocols using anti c kit

1

Isolation and Flow Cytometry of Neutrophils

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Flow cytometry analysis was performed on a LSRII or LSRFortessa (BD Biosciences). To isolate neutrophils from the feet, tissue was diced and incubated at 37°C for 45 min with shaking at 200 rpm (TissueLyserII, Qiagen), in DMEM containing 1 mg/mL Collagenase Type IV (Worthington Biochemical). Cells were then strained through a 70 μM strainer and washed twice in phosphate buffered saline (PBS). Neutrophils from bone marrow and feet were sorted on a FACSAria III (BD Biosciences). FcγR were blocked using TruStain FcX (BioLegend). Data were analyzed using FlowJo software (BD Biosciences). The following reagents were used: Zombie-NIR fixable viability kit (BioLegend), anti-B220 (eBioscience;RA36B2), anti-CD3 (WEHI;KT3.1.1), anti-CD4 (WEHI;GK1.5), anti-CD8 (WEHI;53.6.7), anti-CD11b (BioLegend;M1/70), anti-CD16/32 (WEHI;24G2), anti-CD34 (eBioscience;RAM34), anti-CD45.1 (BioLegend;A20), anti-CD45.2 (BioLegend;104), anti-CD48 (BD Bioscience;C2), anti-CD127 (eBioscience;A7R34), anti-CD135 (BioLegend;A2F10), anti-CD150 (BioLegend;TC15–12F12.2), anti-cKit (WEHI;ACK4), anti-Gr1 (WEHI;RB6–8C5), anti-Ly6G (BD;1A8), anti-Sca-1 (WEHI;Ly6A/E), anti-Siglec-F (Fisher;1RMN44N), AnnexinV-AF647 (BioLegend), and propidium iodide (Sigma).
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2

Embryonic Angiogenesis and Hematopoiesis Imaging

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E10.5 embryos were fixed, stained, and analyzed as described (33 (link), 63 (link)). Embryos were stained with biotinylated anti–PECAM-1 (BD Biosciences, 553371) and anti–c-Kit (BD Biosciences, 553352) antibodies. Samples were mounted in a 1:2 mix of benzyl alcohol (Sigma-Aldrich, 402834) and benzyl benzoate (Acros Organics, 105862500) to increase tissue transparency and visualized with a Nikon A1RS confocal microscope. Three-dimensional reconstructions were generated from Z-stacks (80 to 200 optical sections) using Fiji software.
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3

Flow Cytometric Analysis of Wound Tissue Cells

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To verify recruitment of the EPC population or leukocytes, wound tissues were harvested and digested with 0.1 % type II collagenase (Sigma-Aldrich) after postoperative day 3 or 7. EPCs or single cells derived from wound tissues were subjected to flow cytometric analysis using anti-Sca-1, anti-c-Kit, anti-Flk-1, anti-CD34, anti-CD3, anti-CD8, anti-CD11, and anti-CD45 antibodies (all from BD, San Jose, CA, USA). Flow cytometry was performed using a fluorescence-activated cell sorter (FACS; BD). Histograms represent the cell number (y-axis) versus the fluorescence intensity (x-axis, log scale). FACS gating was performed using cells stained with isotype-matched IgG as a negative control. For each antibody, the proportion of positively stained cells was determined by comparison with isotype-matched control cells. The percentage of positively stained cells is indicated by the positive peaks. Red lines indicate cells stained with each antibody, and black lines indicate the negative control cells. Each experiment was repeated at least three times.
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4

Isolation and Flow Cytometry of Neutrophils

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Flow cytometry analysis was performed on a LSRII or LSRFortessa (BD Biosciences). To isolate neutrophils from the feet, tissue was diced and incubated at 37°C for 45 min with shaking at 200 rpm (TissueLyserII, Qiagen), in DMEM containing 1 mg/mL Collagenase Type IV (Worthington Biochemical). Cells were then strained through a 70 μM strainer and washed twice in phosphate buffered saline (PBS). Neutrophils from bone marrow and feet were sorted on a FACSAria III (BD Biosciences). FcγR were blocked using TruStain FcX (BioLegend). Data were analyzed using FlowJo software (BD Biosciences). The following reagents were used: Zombie-NIR fixable viability kit (BioLegend), anti-B220 (eBioscience;RA36B2), anti-CD3 (WEHI;KT3.1.1), anti-CD4 (WEHI;GK1.5), anti-CD8 (WEHI;53.6.7), anti-CD11b (BioLegend;M1/70), anti-CD16/32 (WEHI;24G2), anti-CD34 (eBioscience;RAM34), anti-CD45.1 (BioLegend;A20), anti-CD45.2 (BioLegend;104), anti-CD48 (BD Bioscience;C2), anti-CD127 (eBioscience;A7R34), anti-CD135 (BioLegend;A2F10), anti-CD150 (BioLegend;TC15–12F12.2), anti-cKit (WEHI;ACK4), anti-Gr1 (WEHI;RB6–8C5), anti-Ly6G (BD;1A8), anti-Sca-1 (WEHI;Ly6A/E), anti-Siglec-F (Fisher;1RMN44N), AnnexinV-AF647 (BioLegend), and propidium iodide (Sigma).
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5

Embryonic Hematopoietic Cell Immunostaining

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Immunostaining was performed as described previously9 (link). E10.5 embryos were fixed (2% paraformaldehyde/PBS, 20 min, 4 °C), equilibrated in 20% sucrose/PBS at 4 °C overnight and then embed in the Tissue Tek before freezing. From each WT and KO embryo, we sequenced the sections and chose 4-5 sections per embryo from ~100 sections at the similar area along the rostral-caudal axis. After additional blocking of endogenous biotin step, antibodies staining were performed. Primary and secondary antibody were used at the following concentrations: Anti-c-Kit (1:100, BD), biotinylated anti-CD34 (1:200, eBioscience), Runx1 (1:500, Abcam) and Hoechst for nuclear staining. Additionally, Ncl (1:100), GFP (MBL, 1:200), RFP (Rockland, 1:200), Lamp1 (Abcam, 1:100) or p62 (Abcam, 1:400) were used for staining ECs and pre-HSCs sorted by flow cytometry and spun onto slides. Secondary antibodies: Alexa Flour 647 anti-rat IgG (1:500), AF488 anti-rabbit IgG (1:1000) and Streptavidin Cy3 (1:1000). The image procedures were performed by confocal microscope (Zeiss LSM 880).
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6

Immunofluorescence Staining of Cell Markers

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Cells were fixed in 4% paraformaldehyde for 20 min, permeabilized in 0.1% Triton X-100/PBS, and then preincubated with blocking solution consisting of PBS containing 5% normal goat serum and 0.05% Tween-20. Cells were then incubated for 2 h in primary antibody [mouse anti-CD133, anti-C-kit, anti-vWF, anti-CDH5 (VE-cadherin), anti-α-SMA, or anti-PDGFRβ (BD Pharmingen, San Diego, CA)]. Reactions were visualized by FITC/TRITC-conjugated anti-human secondary antibody (Vector Laboratories, Burlingame, CA). All samples were observed with a fluorescence microscope (Olympus, Tokyo, Japan).
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7

Characterization of hcMSC Surface Antigens

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BM aspirates were taken from the iliac crest of a healthy male donor after informed consent was provided (approved by the INHA University Medical School Institutional Review Board; IRB Number 10-51). Isolation of hcMSCs was carried out as previously described (21 (link)). Several cell surface antigens on the established hcMSC line, named KBHD502, were characterized by flow cytometry. The antibodies used for the analysis were anti-CD14, anti-CD29, anti-CD31, anti-CD34, anti-CD44, anti-CD73, anti-CD90, anti-CD105, anti-CD119, anti-CD133, anti-CD166, anti-HLA class I, anti-HLA-DR, anti-Stro-1, anti-c-Met, and anti-c-Kit (BD Biosciences Pharmingen, San Diego, CA, USA). The cells were analyzed in a FACSCalibur flow cytometer (BD Biosciences). Isotype-matched control antibodies were used as controls.
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8

Characterizing BM-MSC Phenotypes and Differentiation

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BM-MSC phenotypes were analyzed by flow cytometry using a FACSCalibur (BD Biosciences, NJ, USA). A total of 1 × 106 cells/mL were incubated with FITC-, PerCP-, PE-, or APC-conjugated anti-CD34, anti-CD45, anti-CD29, anti-CD44, anti-CD90, anti-c-kit, or anti-Sca-1 antibodies (BD Biosciences) in phosphate-buffered saline (PBS) containing bovine serum albumin (BSA) for 30 minutes at room temperature.
Adipogenic differentiation was induced by culture with adipogenic medium supplemented with 10−8 M dexamethasone and 10−4 M L-ascorbic-acid-2-phosphate (Sigma-Aldrich, St. Louis, MO) as previously described (Ngoc et al., 2011) [32 (link)]. After 30 days of induction, cells were fixed in 3% formaldehyde in PBS for 10 minutes and stained with Oil Red O.
Osteogenic differentiation was induced by incubation with culture medium that consisted of ascorbic acid, dexamethasone, 6-glycerol phosphate (Sigma-Aldrich, St. Louis, MO), and calcium deposits which were visualized by alizarin red.
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9

Isolation and Identification of B Cell Subsets

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Mononuclear cells from bone marrow and spleen were prepared as previously reported (4 (link), 18 ). B cell sub populations were separated based on expression of specific surface proteins. Early B cell subsets in the bone marrow were identified using the scheme of Melchers (19 (link)). Transitional B cell subsets were identified using the scheme of Allman (20 (link)). Marginal zone and follicular B cells were identified using the scheme of Loder (21 (link)). The following sets of monoclonal antibodies were used: Anti-B220 (PerCP) [BD Pharmingen, San Diego, CA], anti-BP-1 (PE) (a gift from John Kearney, UAB), and anti-IgM (Cy5) [Jackson ImmunoResearch], West Grove, PA], anti-cKit (allophycocyanin) [BD Pharmingen, San Diego, CA], CD19 (SPRD) [Southern Biotech, Birmingham, AL], anti IgD (biotin) [BD Pharmingen], anti CD21 (PE) [BD Pharmingen], anti-CD25 (FITC) [BD Pharmingen, San Diego, CA], anti CD21 (PE) [BD Pharmingen, San Diego, CA], anti AA4.1 (Pecy7) [ebioscience, San Diego, CA] and anti CD23 (FITC) [BD Pharmingen, San Diego, CA].
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10

Isolation of Bone Marrow Stem Cells

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The aspirated blood was collected into a 1.5 mL tube per mouse. Then, the femur and tibia from the left limb of each mouse were dissected and transferred to a 15 mL conical tube containing Hanks’ balanced salt solution supplemented with 1% fetal bovine serum (FBS). PBMCs and BM-KSL cells, which are stem cell populations of EPCs, were isolated as previously reported [29 (link)].
Lineage-negative BM cells (BM-Lin-) were incubated with saturating concentrations of directly labeled anti-c-Kit (dilution, 1:25; BD Biosciences, Franklin Lakes, NJ, USA) and anti-Sca-1 antibodies (at 1:25 dilution) (BD Biosciences) for 30 min on ice. Afterward, BM-KSL cells were isolated by live sterile cell sorting using a BD FACSAria™ Fusion flow cytometer (Becton Dickinson, Franklin Lakes, NJ, USA).
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