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6 protocols using dld 1

1

Characterization of Cancer Cell Lines

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The WiDr, SW480, DLD-1, SW837, PANC-1, MIA PaCa-2, ASF 4-1, TIG-3-20, and KMST-6 cell lines were obtained from the Japanese Cancer Research Resources Bank. The SW48 cell line was from the Cell Resource Center for Biomedical Research of Tohoku University. The HT-29 and H9c2 cell lines were procured from the American Type Culture Collection. The BxPC-3 cell line was obtained from the European Collection of Authenticated Cell Cultures. RPMI-1640 medium (Wako Pure Chemicals Industries) used to culture SW48, WiDr, HT-29, SW480, DLD-1, SW837, and BxPC-3 cells; Eagle’s minimum essential medium (Wako) for MIA PaCa-2, PANC-1, ASF 4-1, and TIG-3-20 cells and Dulbecco’s minimum essential medium (Wako) for H9c2 cells. All media were supplemented with 10% (v/v) heat-inactivated FBS (Nichirei Biosciences, Tokyo, Japan), and cells were incubated under an atmosphere of 95% air and 5% CO2 at 37°C. Testing for Mycoplasma contamination was performed using the activity of certain mycoplasmal enzymes (MycoAlert Mycoplasma detection kit; Lonza, Basel, Switzerland). The number of viable cells was assessed using the trypan blue dye exclusion test.
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2

Cell Culture Conditions for Cancer Cell Lines

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Human colorectal cancer cell lines DLD-1 and WiDr, human rhabdmyosarcoma cell line Rh30, human urinary bladder carcinoma cell lines T24 and 253J-BV, human stomach cancer cell lines KATOIII, NUGC3, and MKN7, and human prostate cancer cell line PC3 were maintained in RPMI-1640 medium (Wako Pure Chemical Industries, Ltd., Osaka, Japan), supplemented with 8% (v/v) heat-inactivated FBS (Sigma-Aldrich Co., St. Louis, MO, USA) and 2 mM l-glutamine. Human diploid fibroblast cell line ASF-4-1 and human rhabdmyosarcoma cell line RD were maintained in E-MEM medium (Wako), supplemented with 10% (v/v) heat-inactivated FBS and 2 mM l-glutamine. All cell lines were cultured under an atmosphere of 95% air and 5% CO2 at 37 °C. DLD-1, WiDr, T24, 253J-BV, KATOIII, MKN7, RD, and ASF-4-1 cell lines were obtained from the JCRB cell bank (Osaka, Japan). The PC3 cell line was purchased from the American Type Cell Collection (ATCC). The Rh30 and NUGC3 cell lines were provided by Dr. Hosoi (Kyoto Prefectural University of Medicine) and Taiho Pharmaceutical (Tokyo, Japan), respectively. The number of viable cells was determined by performing the trypan-blue (Life Technologies, Carlsbad, CA, USA) dye exclusion test.
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Colorectal Cancer Cell Line Characterization

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The human colorectal cancer cell lines HT29, HCT116, DLD-1 and SW480 were purchased from the American Type Culture Collection. These cancer cell lines were certified by short tandem repeat profiling. HT29 and HCT116 cells were cultured in DMEM (FUJIFILM Wako Pure Chemical Corporation) supplemented with 10% fetal bovine serum [(FBS); Gibco; Thermo Fisher Scientific Inc.] and 1% penicillin/streptomycin. DLD-1 cells were cultured in RPMI (FUJIFILM Wako Pure Chemical Corp.) supplemented with 10% FBS and 1% penicillin/streptomycin. SW480 cells were cultured in Leibovitz's L-15 Medium (Gibco; Thermo Fisher Scientific Inc.) supplemented with 10% FBS and 1% penicillin/streptomycin. HT29, HCT116 and DLD-1 cells were cultured at 37°C in 5% CO2, whereas SW480 cells were cultured at 37°C in 100% atmospheric air according to the datasheets for each cell line. Only the HT29 cell line was a BRAF mutant and only the HCT116 cell line was p53 wild-type.
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4

Profiling human CRC cell lines

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Four human CRC cell lines were used in this study. HT‐29, LoVo, and LS174T cell lines were purchased from ATCC. The identity of all cell lines was confirmed by short tandem repeat (STR) testing. STR DNA profiling aids in the identification of human cell lines derived from individual tissue, ensuring the purity of cultures and preventing cross‐contamination. The DLD‐1 cell line was obtained from the Japanese Collection of Research Bioresources (JCRB) Cell Bank (National Institutes ofS Biomedical Innovation, Health and Nutrition). The cell lines were selected based on a previous report describing their histology after establishment as xenografts in nude mice.20 SUIT‐2, a pancreatic cancer cell line without affinity for rBC2LCN,4 was also obtained from the JCRB Cell Bank for use as a negative control in each experiment. HT‐29, LoVo, and LS174T were cultured in McCoy’s 5a, F‐12K, and E‐MEM (all ATCC‐formulated media), respectively. DLD‐1 and SUIT‐2 were cultured in RPMI 1640 and D‐MEM (both from FUJIFILM Wako Pure Chemical), respectively. Each medium was supplemented with 10% FBS (Thermo Fisher Scientific) and 1% penicillin‐streptomycin (FUJIFILM Wako Pure Chemical).
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5

Culturing Luciferase-Expressing CRC Cell Lines

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Human CRC cell lines stably expressing luciferase (DLD-1 clone #1-Luc: JCRB1382, RRID: CVCL J250 and HT-29-Luc: JCRB1383, RRID:CVCL J256) were obtained from the Japanese Cancer Research Resources Bank (Suita City, Osaka, Japan). Human CRC cell lines (DLD-1, RRID: CVCL 0248 and HT-29, RRID: CVCL 0320) were obtained from Taiho Pharmaceutical (Shibuya-ku, Tokyo, Japan). DLD-1 clone #1-Luc, DLD-1, and HT-29 cells were cultured in RPMI 1640 and Phenol Red (Fujifilm Wako, Chuo-ku, Osaka, Japan), and HT-29-Luc cells were cultured in McCoy’s 5A medium. All of the media were supplemented with 10% (v/v) heat-inactivated FBS (Hyclone Laboratories, Logan, UT) and incubated at 37°C and 5% CO2.
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Culturing Human Colorectal Cancer Cells

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The human CRC cell lines SW620 and DLD-1 were obtained from American Type Culture Collection (Manassas, VA, USA). SW620 cells were maintained in Dulbecco’s modified Eagle’s Medium (Wako Pure Chemical Industries, Ltd., Osaka, Japan) containing 10% fetal bovine serum (Gibco BRL, Grand Island, NY, USA) and 1% penicillin/streptomycin (Gibco BRL). DLD-1 cells were maintained in Roswell Park Memorial Institute 1640 medium (Wako Pure Chemical Industries, Ltd.) containing 10% fetal bovine serum (FBS) and 1% penicillin/streptomycin. Cells were cultured at 37 °C in a humidified atmosphere of 5% CO2.
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