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6 protocols using pe isotype control

1

Immunophenotyping of Dendritic Cells

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On day 7 of BMDC induction, cells were fixed with 4% paraformaldehyde, washed, and permeabilized in 0.2% Tween 20 in PBS for 15 minutes at 37°C. Following permeabilization, cells were washed with .1% Tween 20 in FACS buffer (PBS with 0.1% Sodium Azide and 2% FBS), and blocked with TruStain fcX™ (Biolegend 101320) for 10 minutes. Cells were then stained with APC-anti-CD11c (Ebioscience, clone N418), PE-anti-TLR3 antibody (Biolegend 141904), or PE-Isotype control (Biolegend 400508) for 30 minutes on ice. Cells were washed twice with 0.1% Tween 20 in FACS buffer, washed twice with FACS buffer, and then analyzed immediately using a FACSCalibur cell analyzer and the data were analyzed with FlowJo software.
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2

Isolation and Characterization of NK Cells from Mouse Kidneys

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NK cells were purified from mouse kidneys at 24 h after RIR or sham laparotomy. Cells were isolated via pancreatin (Sigma-Aldrich; St. Louis, MO) and collagenase digestion (Worthington; Lakewood, NJ) as described previously (17 ). Briefly, kidney digests were incubated at 37°C for 10 min, and then passed through a 70-μm strainer. Cells were stained with fluorescent antibodies APC-CD3, PE-CD49b, and PE-isotype control (Biolegend, San Diego, CA) in flow cytometry buffer (PBS, 2% fetal bovine serum, 0.1% sodium azide). For each flow cytometric experiment for the detection of cell surface antigens by using multicolor fluorescent antibodies, we used unstained and single color compensation controls to get rid of any possible spillover of individual fluorescence. Data was acquired using a BD LSRFortessa flow cytometer (BD Biosciences; San Jose, CA), and analyzed using FlowJo 7.6.5 software (FlowJo LLC; Ashland, OR).
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3

Flow Cytometric Analysis of T-Cell Markers

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Cell surface staining for flow cytometry was performed using the antibodies CD3-APC-Cy7 (Clone: SK7), γδ-PE-Cy7 (Clone: B1), TIGIT-BV421 (Clone: A15153G), and DNAM-1-PE (Clone: 11Aδ) together with a BV421 isotype Control (Clone: G155-178) and a PE isotype Control (Biolegend, San Diego, USA). The Foxp3-Alexaflour 647 (Clone: 236A/E7) fluorescent antibody was stained independently.
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4

Evaluating PD-L1 Expression in Gastric Cancer Cell Lines

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Human GC cell lines AGS, MKN-45, MKN-74, KATO III, SNU-1, and SNU-16 (5×105 cells) were either directly harvested for staining or co-cultured with CF33-hNIS-Δ (MOI=3), CF33-hNIS-antiPDL1 (MOI=3), or phosphate buffered saline (PBS) (control) for 15 hours. Then, cells were harvested for surface and intracellular CD274/PD-L1 expression. For cell surface staining, cells were washed with PBS, blocked with 10% human serum in PBS, stained with PE-isotype control (Biolegend, Cat#402204, clone#27-35) or PE-anti-PD-L1 antibody (Biolegend, Cat#329706, clone#29E.2A3), washed thrice with 2% FBS PBS, and analyzed with a BD LSRFortessa Flow Cytometer (BD Biosciences, San Jose, California, USA). In the virus-treated group, cells were fixed with 4% paraformaldehyde before performing flow cytometry. For intracellular staining, cells were first washed with PBS and blocked with 10% human serum. Then the cells were fixed/permeabilized with a fixation/permeabilization solution (Catalog#554714, BD Biosciences) for 20 min, washed twice with BD Perm/Wash buffer, stained with antibodies for 30 min, and washed twice with BD Perm/Wash buffer. Stained cells were assessed with a BD LSRFortessa Flow Cytometer and analyzed using Flowjo software. Results are shown as histograms and mean fluorescence intensity (MFI).47 (link) All experiments were repeated at least three times.
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5

Membrane Vesicle Isolation and Analysis

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Membrane vesicle isolates from late-exponential-growth-phase (6-h) cultures were stained with 5 μg/ml FM4-64 (Life Technologies) for 20 min at 37°C and analyzed with a BD Bioscience LSRFortessa. SitC-His was detected in vesicle isolates from USA300 Δspa using a His-PE antibody (BioLegend), and the staining was controlled using the corresponding PE isotype control (BioLegend). For analysis of cytoplasmic GFP, vesicles were isolated from USA300 containing the pTX143-S3 GFP plasmid. The correlation of FM4-64-positive events with total events was used to calculate the vesicle concentrations in the samples. FlowJo V10 was used for the data analysis.
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6

HIV-1 BaL Infection Pathway Analysis

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HIV-1 BaL was obtained from the NIH AIDS Research and Reference Reagent Program, National Institute of Allergy and Infectious Diseases, NIH. The HIV-1 BaL strain has been shown to efficiently infect, via the CCR5 co-receptor, and replicate within CD4+ T-cells49 (link). Argonaute-1, p-NFκB, NFκB, p-ERK, p-Src, p-Akt, NFAT1, p-CREB, CREB, Oct-1, Ubiquitin, and β-Actin antibodies were obtained from Cell Signaling Technology (Danvers, MA). GW182, D1DR, D2DR, D3DR, D4DR, Sigma-1 Receptor, and GAPDH antibodies were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). FITC-conjugated p24 GAG (6604665) antibody was obtained from Beckman Coulter, Inc. (Brea, CA). PE-conjugated CD45RO, PE-conjugated HLA-DR, FITC-conjugated CD45RA, FITC-conjugated CD25, FITC-conjugated CD69, PE isotype control, and FITC isotype control antibodies were purchased from Biolegend (San Diego, CA). p-NFAT1 antibody was obtained from Thermo Fisher Scientific (Waltham, MA). Fluo-4, AM was purchased from Invitrogen (Carlsbad, CA). Methamphetamine hydrochloride and sigma-1 receptor inhibitor (BD1047) were purchased from Sigma Aldrich (St. Louis, MO).
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