The largest database of trusted experimental protocols

5 protocols using cdcp1

1

Comprehensive Western Blot and IHC Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For western blot the following antibodies were used: CDCP1 (#4115, Cell Signaling, Danvers, MA, US), pMEK (#9154S, Cell signaling), MEK (#4694S, Cell signaling), pAKT (#9271 T, Cell signaling), AKT (#2920S, Cell Signaling) pERK (#9102S, Cell Signaling), ERK (#4377, Cell Signaling), GAPDH (#2118, Cell Signaling), β-actin (#A2228, Sigma-Aldrich, St. Louis, MO, US). Some of the membranes used for the western blot were cut prior to hybridization. For IHC analysis, the following antibodies were used: CDCP1 (#4115, rabbit polyclonal, Cell Signaling, 1:50), Ki67 (#MSK018, Zytomed, Berlin, Germany, 1:50), p-Erk1/2 (clone 197G2, rabbit monoclonal, Cell Signaling, 1:50), CK5 (clone XM26, mouse monoclonal, Diagnostic BioSystems®, USA, dilution 1:50), CK14 (clone SP53, rabbit monoclonal, Cell Marque™, USA, dilution 1:40).
+ Open protocol
+ Expand
2

Comprehensive Antibody Characterization for Biological Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The primary antibodies used for immunohistochemistry, immunofluorescence, immunoprecipitation, and western blotting analysis were as follows: CDCP1 (Cell Signaling Technology #4115; Danvers, MA, USA), CDCP1 (Abcam #188818; Cambridge, UK), IdU (Abcam #181664), BrdU (Abcam #6326), HA (Abcam #18181), myc (Abcam #32072), Kras (Santa Cruz Biotechnology #sc-30; Dallas, TX, USA), Flag (Sigma-Aldrich #F1084), malonyl-lysine (PTM Biolabs 901; Chicago, IL, USA), succinyl-lysine (PTM Biolabs 401), glutaryl-lysine (PTM Biolabs 1151), acetyl-lysine (PTM Biolab 104), Sirt5 (Cell Signaling Technology 8782), tubulin (Abcam 7291), and TPI (Abcam #96696). The secondary antibodies used for immunofluorescence were Alexa Fluor 488 or 594 goat anti-mouse (#A-11001, #A-11005) or rabbit anti-mouse (#A-11034, R37117) IgG from Thermo Fisher Scientific (Waltham, MA, USA). The HRP-conjugated secondary antibodies (#7076, #7074, and #7077) used for western blot were from Cell Signaling Technologies.
+ Open protocol
+ Expand
3

Immunoblotting of Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were plated at approximately 0.5 × 106 cells/well in a 6-well plate and cultured overnight before drug treatment. Medium was replaced with medium supplemented with Gefitinib (2 µM), SB590885 (2 µM), PD0325901 (2 µM), XL147 (2 µM), MK2206 (2 µM), or Vehicle (0.2% DMSO). The cells were further incubated at 37˚C for 48 hr, after which the cells were washed with PBS and lysed with RIPA Lysis and Extraction Buffer (Thermo Scientific) supplemented 1X Protease Inhibitor Cocktail (Sigma) at 4°C for 30 min. Immunoblotting was performed using AKT(pan) (Cell Signaling mouse mAB, #2920), Phospho-AKT (Thr308) (Cell Signaling rabbit mAB, #2965), p44/42 MAPK (Erk1/2) (Cell Signaling rabbit mAB, #4695), Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (Cell Signaling rabbit mAB, #4370), CDCP1 (Cell Signaling rabbit mAB, #13794), Tubulin (Sigma mouse mAB #T6199), IRDye 680RD Goat anti-Mouse (Licor # 925–68070), and IRDye 800CW Donkey anti-Rabbit (Licor # 925–32213) antibodies.
+ Open protocol
+ Expand
4

Western Blot Analysis of Tumor Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumor samples were added to Pierce RIPA lysis buffer (89900, ThermoFisher Scientific) with Halt protease and phosphatase inhibitors (1861281, ThermoFisher Scientific). The samples were homogenized using a probe sonicator (Omni TH-01) and then centrifuged for 15 minutes at 15,000 ×g. 4X SDS-loading buffer was added to protein lysates and 15 μg of lysate were resolved on a 4–12% Bis Tris gel (NW04120BOX, Invitrogen). Gels were transferred onto an Immobilon-P membrane (IPVH00010, Millipore). Membranes were blocked in 5% milk in TBST for 90 minutes before being placed in a primary antibody solution. Primary antibodies used were CDCP1 (4115, Cell Signaling, 1:1000), PSMA (12815, Cell Signaling, 1:1000), and B-Actin (A5441, Sigma-Aldrich, 1:5000). Membranes were then washed and incubated with a secondary antibody solution for 30 min at room temperature. Secondary antibodies used were goat anti-rabbit (65-6120, Invitrogen, 1:5000) and goat anti-rat (62-6520, Invitrogen, 1:5000). Proteins were detected using West Pico Chemiluminescent Substrate for 20 seconds (34578, ThermoFisher Scientific) and then exposed to film (30-507, Blue Devil). Each immunoblot was reproduced at least once with freshly harvested protein samples.
+ Open protocol
+ Expand
5

Protein Expression Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells (2-8 × 10 5 ) were seeded in 100-mm dishes and exposed at indicated conditions. The proteins were harvested as previously described [15] . Primary antibodies against the following molecules were purchased from Cell Signaling Technology (Beverley, MA, USA): WEE1 (#4936), p-WEE1-Ser642 (#4910), p-HER2-Tyr 1248 (#2247), HER2 (#2165), CDC2 (#9112), p-CDC2-Tyr15 (#9111), p-NF-κB p65-Ser536 (#3033), NF-κB p65 (#8242), CtIP (#9201), PD-L1 (#13684), p-SRC-Tyr 416 (#2101), SRC (#2108), p-CDCP-1-Tyr707 (#13111), CDCP-1 (#4115), BRCA1 (#9010), p-CREB-Ser133 (#4095), CREB (#4034), TEAD1 (#12292), FOXA2 (#3143), PCNA (#13110), CD163 (#93498), FOXP3 (#12632), CD8α (#85336). Anti-PD-1 antibody (#ab52587) was from Abcam Bioscience (Cambridge, UK); Anti-β-actin antibody was from Sigma-Aldrich; anti-γH2AX antibody (#05-636) was from Millipore (Billerica, MA, USA); anti-CTLA-4 (#sc-9094) and anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH; #sc-25778) were from Santa Cruz Biotechnology (Dallas,
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!